Serialized Form

Package org.biopax.paxtools.model.level2

Class org.biopax.paxtools.model.level2.PaxtoolsProperties extends java.util.Properties implements Serializable

Package org.biopax.paxtools.persistence.level2

Class org.biopax.paxtools.persistence.level2.OwlFileInfo extends java.lang.Object implements Serializable

Serialized Fields

keyName

java.lang.String keyName

ids

java.util.List<E> ids

uploadDate

java.util.Date uploadDate

Class org.biopax.paxtools.persistence.level2.ProxyIdInfo extends java.lang.Object implements Serializable

Serialized Fields

proxyId

long proxyId

rdfId

java.lang.String rdfId

uploadDate

java.util.Date uploadDate

Package org.biopax.paxtools.proxy.level2

Class org.biopax.paxtools.proxy.level2.biochemicalReactionProxy extends conversionProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.BioPAXElementProxy extends java.lang.Object implements Serializable

Serialized Fields

object

BioPAXElement object

target object

proxyId

long proxyId

key ID

Class org.biopax.paxtools.proxy.level2.bioSourceProxy extends externalReferenceUtilityClassProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.catalysisProxy extends controlProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.chemicalStructureProxy extends utilityClassProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.complexAssemblyProxy extends conversionProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.complexProxy extends physicalEntityProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.confidenceProxy extends utilityClassProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.controlProxy extends physicalInteractionProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.conversionProxy extends physicalInteractionProxy implements Serializable

Serialized Fields

proxyLEFT

java.util.Set<E> proxyLEFT

proxyRIGHT

java.util.Set<E> proxyRIGHT

Class org.biopax.paxtools.proxy.level2.dataSourceProxy extends externalReferenceUtilityClassProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.deltaGprimeOProxy extends utilityClassProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.dnaProxy extends sequenceEntityProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.entityProxy extends InteractionParticipantProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.evidenceProxy extends utilityClassProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.experimentalFormProxy extends utilityClassProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.externalReferenceUtilityClassProxy extends utilityClassProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.InteractionParticipantProxy extends BioPAXElementProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.InteractionParticipantUtilityClassProxy extends InteractionParticipantProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.interactionProxy extends processProxy implements Serializable

Serialized Fields

proxyPARTICIPANTS

java.util.Set<E> proxyPARTICIPANTS

Class org.biopax.paxtools.proxy.level2.kPrimeProxy extends utilityClassProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.modulationProxy extends controlProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.openControlledVocabularyProxy extends externalReferenceUtilityClassProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.pathwayComponentProxy extends BioPAXElementProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.pathwayProxy extends processProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.pathwayStepProxy extends pathwayComponentProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.physicalEntityParticipantProxy extends InteractionParticipantUtilityClassProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.physicalEntityProxy extends entityProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.physicalInteractionProxy extends interactionProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.processProxy extends entityProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.proteinProxy extends sequenceEntityProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.publicationXrefProxy extends xrefProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.relationshipXrefProxy extends xrefProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.rnaProxy extends sequenceEntityProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.sequenceEntityProxy extends physicalEntityProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.sequenceFeatureProxy extends utilityClassProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.sequenceIntervalProxy extends sequenceLocationProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.sequenceLocationProxy extends utilityClassProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.sequenceParticipantProxy extends physicalEntityParticipantProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.sequenceSiteProxy extends sequenceLocationProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.smallMoleculeProxy extends physicalEntityProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.transportProxy extends conversionProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.transportWithBiochemicalReactionProxy extends biochemicalReactionProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.unificationXrefProxy extends xrefProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.utilityClassProxy extends BioPAXElementProxy implements Serializable

Class org.biopax.paxtools.proxy.level2.xrefProxy extends externalReferenceUtilityClassProxy implements Serializable

Package org.biopax.paxtools.util

Class org.biopax.paxtools.util.BioPaxIOException extends java.lang.RuntimeException implements Serializable

Class org.biopax.paxtools.util.IllegalBioPAXArgumentException extends java.lang.IllegalArgumentException implements Serializable

Class org.biopax.paxtools.util.IllegalRDFIDException extends java.lang.IllegalArgumentException implements Serializable