org.biopax.paxtools.proxy.level2
Class sequenceEntityProxy

java.lang.Object
  org.biopax.paxtools.proxy.level2.BioPAXElementProxy
      org.biopax.paxtools.proxy.level2.InteractionParticipantProxy
          org.biopax.paxtools.proxy.level2.entityProxy
              org.biopax.paxtools.proxy.level2.physicalEntityProxy
                  org.biopax.paxtools.proxy.level2.sequenceEntityProxy

All Implemented Interfaces:

java.io.Serializable, BioPAXElement, entity, InteractionParticipant, physicalEntity, sequenceEntity, XReferrable

Direct Known Subclasses:

dnaProxy, proteinProxy, rnaProxy

@Indexed(index="paxtools")
public abstract class sequenceEntityProxy
extends physicalEntityProxy
implements sequenceEntity, java.io.Serializable

Proxy for sequenceEntity

See Also:

Serialized Form

Field Summary

Fields inherited from class org.biopax.paxtools.proxy.level2.BioPAXElementProxy

SEARCH_FIELD_AVAILABILITY, SEARCH_FIELD_COMMENT, SEARCH_FIELD_EC_NUMBER, SEARCH_FIELD_KEYWORD, SEARCH_FIELD_NAME, SEARCH_FIELD_SEQUENCE, SEARCH_FIELD_SYNONYMS, SEARCH_FIELD_TERM, SEARCH_FIELD_XREF_DB, SEARCH_FIELD_XREF_ID, SEARCH_INDEX_NAME

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

protected

sequenceEntityProxy()

Method Summary

bioSource	getORGANISM()
java.lang.String	getSEQUENCE()
void	setORGANISM(bioSource ORGANISM)
void	setSEQUENCE(java.lang.String SEQUENCE)

Methods inherited from class org.biopax.paxtools.proxy.level2.physicalEntityProxy

isPHYSICAL_ENTITYof

Methods inherited from class org.biopax.paxtools.proxy.level2.entityProxy

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, addXREF, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, getXREF, isPARTICIPANTSof, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, removeXREF, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS, setXREF

Methods inherited from class org.biopax.paxtools.proxy.level2.BioPAXElementProxy

addCOMMENT, doubleSetToStringSet, doubleToString, equals, equivalenceCode, floatToString, getCOMMENT, getModelInterface, getProxyId, getRDFId, hashCode, isEquivalent, removeCOMMENT, setCOMMENT, setProxyId, setRDFId, stringSetToDoubleSet, stringToDouble, stringToFloat

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.physicalEntity

isPHYSICAL_ENTITYof

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Constructor Detail

sequenceEntityProxy

protected sequenceEntityProxy()

Method Detail

getORGANISM

public bioSource getORGANISM()

Specified by:

getORGANISM in interface sequenceEntity

getSEQUENCE

@Field(name="sequence",
       index=TOKENIZED)
public java.lang.String getSEQUENCE()

Specified by:

getSEQUENCE in interface sequenceEntity

setORGANISM

public void setORGANISM(bioSource ORGANISM)

Specified by:

setORGANISM in interface sequenceEntity

setSEQUENCE

public void setSEQUENCE(java.lang.String SEQUENCE)

Specified by:

setSEQUENCE in interface sequenceEntity