org.biopax.paxtools.proxy.level2
Class processProxy

java.lang.Object
  org.biopax.paxtools.proxy.level2.BioPAXElementProxy
      org.biopax.paxtools.proxy.level2.InteractionParticipantProxy
          org.biopax.paxtools.proxy.level2.entityProxy
              org.biopax.paxtools.proxy.level2.processProxy

All Implemented Interfaces:

java.io.Serializable, BioPAXElement, entity, InteractionParticipant, pathwayComponent, process, XReferrable

Direct Known Subclasses:

interactionProxy, pathwayProxy

@Indexed(index="paxtools")
public abstract class processProxy
extends entityProxy
implements process, java.io.Serializable

Proxy for process

See Also:

Serialized Form

Field Summary

Fields inherited from class org.biopax.paxtools.proxy.level2.BioPAXElementProxy

SEARCH_FIELD_AVAILABILITY, SEARCH_FIELD_COMMENT, SEARCH_FIELD_EC_NUMBER, SEARCH_FIELD_KEYWORD, SEARCH_FIELD_NAME, SEARCH_FIELD_SEQUENCE, SEARCH_FIELD_SYNONYMS, SEARCH_FIELD_TERM, SEARCH_FIELD_XREF_DB, SEARCH_FIELD_XREF_ID, SEARCH_INDEX_NAME

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

protected

processProxy()

Method Summary

void	addEVIDENCE(evidence EVIDENCE)
java.util.Set<evidence>	getEVIDENCE()
java.util.Set<control>	isCONTROLLEDOf()
java.util.Set<pathway>	isPATHWAY_COMPONENTSof()
java.util.Set<pathwayStep>	isSTEP_INTERACTIONSOf()
void	removeEVIDENCE(evidence EVIDENCE)
void	setEVIDENCE(java.util.Set<evidence> EVIDENCE)

Methods inherited from class org.biopax.paxtools.proxy.level2.entityProxy

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, addXREF, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, getXREF, isPARTICIPANTSof, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, removeXREF, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS, setXREF

Methods inherited from class org.biopax.paxtools.proxy.level2.BioPAXElementProxy

addCOMMENT, doubleSetToStringSet, doubleToString, equals, equivalenceCode, floatToString, getCOMMENT, getModelInterface, getProxyId, getRDFId, hashCode, isEquivalent, removeCOMMENT, setCOMMENT, setProxyId, setRDFId, stringSetToDoubleSet, stringToDouble, stringToFloat

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Constructor Detail

processProxy

protected processProxy()

Method Detail

addEVIDENCE

public void addEVIDENCE(evidence EVIDENCE)

Specified by:

addEVIDENCE in interface process

getEVIDENCE

public java.util.Set<evidence> getEVIDENCE()

Specified by:

getEVIDENCE in interface process

isCONTROLLEDOf

public java.util.Set<control> isCONTROLLEDOf()

Specified by:

isCONTROLLEDOf in interface process

isSTEP_INTERACTIONSOf

public java.util.Set<pathwayStep> isSTEP_INTERACTIONSOf()

Specified by:

isSTEP_INTERACTIONSOf in interface process

removeEVIDENCE

public void removeEVIDENCE(evidence EVIDENCE)

Specified by:

removeEVIDENCE in interface process

setEVIDENCE

public void setEVIDENCE(java.util.Set<evidence> EVIDENCE)

Specified by:

setEVIDENCE in interface process

isPATHWAY_COMPONENTSof

public java.util.Set<pathway> isPATHWAY_COMPONENTSof()

Specified by:

isPATHWAY_COMPONENTSof in interface pathwayComponent