org.biopax.paxtools.proxy.level2
Class physicalInteractionProxy

java.lang.Object
  org.biopax.paxtools.proxy.level2.BioPAXElementProxy
      org.biopax.paxtools.proxy.level2.InteractionParticipantProxy
          org.biopax.paxtools.proxy.level2.entityProxy
              org.biopax.paxtools.proxy.level2.processProxy
                  org.biopax.paxtools.proxy.level2.interactionProxy
                      org.biopax.paxtools.proxy.level2.physicalInteractionProxy

All Implemented Interfaces:

java.io.Serializable, BioPAXElement, entity, interaction, InteractionParticipant, pathwayComponent, physicalInteraction, process, XReferrable

Direct Known Subclasses:

controlProxy, conversionProxy

@Indexed(index="paxtools")
public class physicalInteractionProxy
extends interactionProxy
implements physicalInteraction, java.io.Serializable

Proxy for physicalInteraction

See Also:

Serialized Form

Field Summary

Fields inherited from class org.biopax.paxtools.proxy.level2.BioPAXElementProxy

SEARCH_FIELD_AVAILABILITY, SEARCH_FIELD_COMMENT, SEARCH_FIELD_EC_NUMBER, SEARCH_FIELD_KEYWORD, SEARCH_FIELD_NAME, SEARCH_FIELD_SEQUENCE, SEARCH_FIELD_SYNONYMS, SEARCH_FIELD_TERM, SEARCH_FIELD_XREF_DB, SEARCH_FIELD_XREF_ID, SEARCH_INDEX_NAME

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

physicalInteractionProxy()

Method Summary

void	addINTERACTION_TYPE(openControlledVocabulary INTERACTION_TYPE)
protected void	call_setPARTICIPANTS_x(java.util.Set<InteractionParticipant> PARTICIPANTS)
java.util.Set<openControlledVocabulary>	getINTERACTION_TYPE()
void	removeINTERACTION_TYPE(openControlledVocabulary INTERACTION_TYPE)
void	setINTERACTION_TYPE(java.util.Set<openControlledVocabulary> INTERACTION_TYPE)

Methods inherited from class org.biopax.paxtools.proxy.level2.interactionProxy

addPARTICIPANTS, getPARTICIPANTS_x, getPARTICIPANTS, removePARTICIPANTS, setPARTICIPANTS_x, setPARTICIPANTS

Methods inherited from class org.biopax.paxtools.proxy.level2.processProxy

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isPATHWAY_COMPONENTSof, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from class org.biopax.paxtools.proxy.level2.entityProxy

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, addXREF, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, getXREF, isPARTICIPANTSof, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, removeXREF, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS, setXREF

Methods inherited from class org.biopax.paxtools.proxy.level2.BioPAXElementProxy

addCOMMENT, doubleSetToStringSet, doubleToString, equals, equivalenceCode, floatToString, getCOMMENT, getModelInterface, getProxyId, getRDFId, hashCode, isEquivalent, removeCOMMENT, setCOMMENT, setProxyId, setRDFId, stringSetToDoubleSet, stringToDouble, stringToFloat

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.interaction

addPARTICIPANTS, getPARTICIPANTS, removePARTICIPANTS, setPARTICIPANTS

Methods inherited from interface org.biopax.paxtools.model.level2.process

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.pathwayComponent

isPATHWAY_COMPONENTSof

Constructor Detail

physicalInteractionProxy

public physicalInteractionProxy()

Method Detail

addINTERACTION_TYPE

public void addINTERACTION_TYPE(openControlledVocabulary INTERACTION_TYPE)

Specified by:

addINTERACTION_TYPE in interface physicalInteraction

getINTERACTION_TYPE

public java.util.Set<openControlledVocabulary> getINTERACTION_TYPE()

Specified by:

getINTERACTION_TYPE in interface physicalInteraction

removeINTERACTION_TYPE

public void removeINTERACTION_TYPE(openControlledVocabulary INTERACTION_TYPE)

Specified by:

removeINTERACTION_TYPE in interface physicalInteraction

setINTERACTION_TYPE

public void setINTERACTION_TYPE(java.util.Set<openControlledVocabulary> INTERACTION_TYPE)

Specified by:

setINTERACTION_TYPE in interface physicalInteraction

call_setPARTICIPANTS_x

protected void call_setPARTICIPANTS_x(java.util.Set<InteractionParticipant> PARTICIPANTS)

Overrides:

call_setPARTICIPANTS_x in class interactionProxy