org.biopax.paxtools.proxy.level2
Class pathwayProxy

java.lang.Object
  org.biopax.paxtools.proxy.level2.BioPAXElementProxy
      org.biopax.paxtools.proxy.level2.InteractionParticipantProxy
          org.biopax.paxtools.proxy.level2.entityProxy
              org.biopax.paxtools.proxy.level2.processProxy
                  org.biopax.paxtools.proxy.level2.pathwayProxy

All Implemented Interfaces:

java.io.Serializable, BioPAXElement, entity, InteractionParticipant, pathway, pathwayComponent, process, XReferrable

@Indexed(index="paxtools")
public class pathwayProxy
extends processProxy
implements pathway, java.io.Serializable

Proxy for pathway

See Also:

Serialized Form

Field Summary

Fields inherited from class org.biopax.paxtools.proxy.level2.BioPAXElementProxy

SEARCH_FIELD_AVAILABILITY, SEARCH_FIELD_COMMENT, SEARCH_FIELD_EC_NUMBER, SEARCH_FIELD_KEYWORD, SEARCH_FIELD_NAME, SEARCH_FIELD_SEQUENCE, SEARCH_FIELD_SYNONYMS, SEARCH_FIELD_TERM, SEARCH_FIELD_XREF_DB, SEARCH_FIELD_XREF_ID, SEARCH_INDEX_NAME

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

pathwayProxy()

Method Summary

void	addPATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT)
bioSource	getORGANISM()
java.util.Set<pathwayComponent>	getPATHWAY_COMPONENTS()
void	removePATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT)
void	setORGANISM(bioSource ORGANISM)
void	setPATHWAY_COMPONENTS(java.util.Set<pathwayComponent> PATHWAY_COMPONENTS)

Methods inherited from class org.biopax.paxtools.proxy.level2.processProxy

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isPATHWAY_COMPONENTSof, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from class org.biopax.paxtools.proxy.level2.entityProxy

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, addXREF, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, getXREF, isPARTICIPANTSof, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, removeXREF, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS, setXREF

Methods inherited from class org.biopax.paxtools.proxy.level2.BioPAXElementProxy

addCOMMENT, doubleSetToStringSet, doubleToString, equals, equivalenceCode, floatToString, getCOMMENT, getModelInterface, getProxyId, getRDFId, hashCode, isEquivalent, removeCOMMENT, setCOMMENT, setProxyId, setRDFId, stringSetToDoubleSet, stringToDouble, stringToFloat

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.process

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.pathwayComponent

isPATHWAY_COMPONENTSof

Constructor Detail

pathwayProxy

public pathwayProxy()

Method Detail

addPATHWAY_COMPONENTS

public void addPATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT)

Specified by:

addPATHWAY_COMPONENTS in interface pathway

getORGANISM

public bioSource getORGANISM()

Specified by:

getORGANISM in interface pathway

getPATHWAY_COMPONENTS

public java.util.Set<pathwayComponent> getPATHWAY_COMPONENTS()

Specified by:

getPATHWAY_COMPONENTS in interface pathway

removePATHWAY_COMPONENTS

public void removePATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT)

Specified by:

removePATHWAY_COMPONENTS in interface pathway

setORGANISM

public void setORGANISM(bioSource ORGANISM)

Specified by:

setORGANISM in interface pathway

setPATHWAY_COMPONENTS

public void setPATHWAY_COMPONENTS(java.util.Set<pathwayComponent> PATHWAY_COMPONENTS)

Specified by:

setPATHWAY_COMPONENTS in interface pathway