org.biopax.paxtools.proxy.level2
Class conversionProxy

java.lang.Object
  org.biopax.paxtools.proxy.level2.BioPAXElementProxy
      org.biopax.paxtools.proxy.level2.InteractionParticipantProxy
          org.biopax.paxtools.proxy.level2.entityProxy
              org.biopax.paxtools.proxy.level2.processProxy
                  org.biopax.paxtools.proxy.level2.interactionProxy
                      org.biopax.paxtools.proxy.level2.physicalInteractionProxy
                          org.biopax.paxtools.proxy.level2.conversionProxy

All Implemented Interfaces:

java.io.Serializable, BioPAXElement, conversion, entity, interaction, InteractionParticipant, pathwayComponent, physicalInteraction, process, XReferrable

Direct Known Subclasses:

biochemicalReactionProxy, complexAssemblyProxy, transportProxy

@Indexed(index="paxtools")
public class conversionProxy
extends physicalInteractionProxy
implements conversion, java.io.Serializable

Proxy for conversion

See Also:

Serialized Form

Field Summary

Fields inherited from class org.biopax.paxtools.proxy.level2.BioPAXElementProxy

SEARCH_FIELD_AVAILABILITY, SEARCH_FIELD_COMMENT, SEARCH_FIELD_EC_NUMBER, SEARCH_FIELD_KEYWORD, SEARCH_FIELD_NAME, SEARCH_FIELD_SEQUENCE, SEARCH_FIELD_SYNONYMS, SEARCH_FIELD_TERM, SEARCH_FIELD_XREF_DB, SEARCH_FIELD_XREF_ID, SEARCH_INDEX_NAME

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

conversionProxy()

Method Summary

void	addLEFT(physicalEntityParticipant LEFT)
void	addRIGHT(physicalEntityParticipant RIGHT)
java.util.Set<physicalEntityParticipant>	getLEFT_x()
java.util.Set<physicalEntityParticipant>	getLEFT()
java.util.Set<physicalEntityParticipant>	getRIGHT_x()
java.util.Set<physicalEntityParticipant>	getRIGHT()
SpontaneousType	getSPONTANEOUS()
void	removeLEFT(physicalEntityParticipant LEFT)
void	removeRIGHT(physicalEntityParticipant RIGHT)
void	setLEFT_x(java.util.Set<physicalEntityParticipant> LEFT)
void	setLEFT(java.util.Set<physicalEntityParticipant> LEFT)
void	setRIGHT_x(java.util.Set<physicalEntityParticipant> RIGHT)
void	setRIGHT(java.util.Set<physicalEntityParticipant> RIGHT)
void	setSPONTANEOUS(SpontaneousType SPONTANEOUS)

Methods inherited from class org.biopax.paxtools.proxy.level2.physicalInteractionProxy

addINTERACTION_TYPE, call_setPARTICIPANTS_x, getINTERACTION_TYPE, removeINTERACTION_TYPE, setINTERACTION_TYPE

Methods inherited from class org.biopax.paxtools.proxy.level2.interactionProxy

addPARTICIPANTS, getPARTICIPANTS_x, getPARTICIPANTS, removePARTICIPANTS, setPARTICIPANTS_x, setPARTICIPANTS

Methods inherited from class org.biopax.paxtools.proxy.level2.processProxy

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isPATHWAY_COMPONENTSof, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from class org.biopax.paxtools.proxy.level2.entityProxy

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, addXREF, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, getXREF, isPARTICIPANTSof, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, removeXREF, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS, setXREF

Methods inherited from class org.biopax.paxtools.proxy.level2.BioPAXElementProxy

addCOMMENT, doubleSetToStringSet, doubleToString, equals, equivalenceCode, floatToString, getCOMMENT, getModelInterface, getProxyId, getRDFId, hashCode, isEquivalent, removeCOMMENT, setCOMMENT, setProxyId, setRDFId, stringSetToDoubleSet, stringToDouble, stringToFloat

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.physicalInteraction

addINTERACTION_TYPE, getINTERACTION_TYPE, removeINTERACTION_TYPE, setINTERACTION_TYPE

Methods inherited from interface org.biopax.paxtools.model.level2.interaction

addPARTICIPANTS, getPARTICIPANTS, removePARTICIPANTS, setPARTICIPANTS

Methods inherited from interface org.biopax.paxtools.model.level2.process

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.pathwayComponent

isPATHWAY_COMPONENTSof

Constructor Detail

conversionProxy

public conversionProxy()

Method Detail

getLEFT

public java.util.Set<physicalEntityParticipant> getLEFT()

Specified by:

getLEFT in interface conversion

setLEFT

public void setLEFT(java.util.Set<physicalEntityParticipant> LEFT)

Specified by:

setLEFT in interface conversion

getLEFT_x

public java.util.Set<physicalEntityParticipant> getLEFT_x()

setLEFT_x

public void setLEFT_x(java.util.Set<physicalEntityParticipant> LEFT)

addLEFT

public void addLEFT(physicalEntityParticipant LEFT)

Specified by:

addLEFT in interface conversion

removeLEFT

public void removeLEFT(physicalEntityParticipant LEFT)

Specified by:

removeLEFT in interface conversion

getRIGHT

public java.util.Set<physicalEntityParticipant> getRIGHT()

Specified by:

getRIGHT in interface conversion

setRIGHT

public void setRIGHT(java.util.Set<physicalEntityParticipant> RIGHT)

Specified by:

setRIGHT in interface conversion

getRIGHT_x

public java.util.Set<physicalEntityParticipant> getRIGHT_x()

setRIGHT_x

public void setRIGHT_x(java.util.Set<physicalEntityParticipant> RIGHT)

addRIGHT

public void addRIGHT(physicalEntityParticipant RIGHT)

Specified by:

addRIGHT in interface conversion

removeRIGHT

public void removeRIGHT(physicalEntityParticipant RIGHT)

Specified by:

removeRIGHT in interface conversion

getSPONTANEOUS

public SpontaneousType getSPONTANEOUS()

Specified by:

getSPONTANEOUS in interface conversion

setSPONTANEOUS

public void setSPONTANEOUS(SpontaneousType SPONTANEOUS)

Specified by:

setSPONTANEOUS in interface conversion