org.biopax.paxtools.proxy.level2
Class complexProxy

java.lang.Object
  org.biopax.paxtools.proxy.level2.BioPAXElementProxy
      org.biopax.paxtools.proxy.level2.InteractionParticipantProxy
          org.biopax.paxtools.proxy.level2.entityProxy
              org.biopax.paxtools.proxy.level2.physicalEntityProxy
                  org.biopax.paxtools.proxy.level2.complexProxy

All Implemented Interfaces:

java.io.Serializable, BioPAXElement, complex, entity, InteractionParticipant, physicalEntity, XReferrable

@Indexed(index="paxtools")
public class complexProxy
extends physicalEntityProxy
implements complex, java.io.Serializable

Proxy for complex

See Also:

Serialized Form

Field Summary

Fields inherited from class org.biopax.paxtools.proxy.level2.BioPAXElementProxy

SEARCH_FIELD_AVAILABILITY, SEARCH_FIELD_COMMENT, SEARCH_FIELD_EC_NUMBER, SEARCH_FIELD_KEYWORD, SEARCH_FIELD_NAME, SEARCH_FIELD_SEQUENCE, SEARCH_FIELD_SYNONYMS, SEARCH_FIELD_TERM, SEARCH_FIELD_XREF_DB, SEARCH_FIELD_XREF_ID, SEARCH_INDEX_NAME

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

complexProxy()

Method Summary

void	addCOMPONENTS(physicalEntityParticipant COMPONENTS)
java.util.Set<physicalEntityParticipant>	getCOMPONENTS()
bioSource	getORGANISM()
void	removeCOMPONENTS(physicalEntityParticipant COMPONENTS)
void	setCOMPONENTS(java.util.Set<physicalEntityParticipant> COMPONENTS)
void	setORGANISM(bioSource ORGANISM)

Methods inherited from class org.biopax.paxtools.proxy.level2.physicalEntityProxy

isPHYSICAL_ENTITYof

Methods inherited from class org.biopax.paxtools.proxy.level2.entityProxy

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, addXREF, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, getXREF, isPARTICIPANTSof, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, removeXREF, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS, setXREF

Methods inherited from class org.biopax.paxtools.proxy.level2.BioPAXElementProxy

addCOMMENT, doubleSetToStringSet, doubleToString, equals, equivalenceCode, floatToString, getCOMMENT, getModelInterface, getProxyId, getRDFId, hashCode, isEquivalent, removeCOMMENT, setCOMMENT, setProxyId, setRDFId, stringSetToDoubleSet, stringToDouble, stringToFloat

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.physicalEntity

isPHYSICAL_ENTITYof

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Constructor Detail

complexProxy

public complexProxy()

Method Detail

getCOMPONENTS

public java.util.Set<physicalEntityParticipant> getCOMPONENTS()

Specified by:

getCOMPONENTS in interface complex

setCOMPONENTS

public void setCOMPONENTS(java.util.Set<physicalEntityParticipant> COMPONENTS)

Specified by:

setCOMPONENTS in interface complex

addCOMPONENTS

public void addCOMPONENTS(physicalEntityParticipant COMPONENTS)

Specified by:

addCOMPONENTS in interface complex

removeCOMPONENTS

public void removeCOMPONENTS(physicalEntityParticipant COMPONENTS)

Specified by:

removeCOMPONENTS in interface complex

getORGANISM

public bioSource getORGANISM()

Specified by:

getORGANISM in interface complex

setORGANISM

public void setORGANISM(bioSource ORGANISM)

Specified by:

setORGANISM in interface complex