org.biopax.paxtools.proxy.level2
Class catalysisProxy

java.lang.Object
  org.biopax.paxtools.proxy.level2.BioPAXElementProxy
      org.biopax.paxtools.proxy.level2.InteractionParticipantProxy
          org.biopax.paxtools.proxy.level2.entityProxy
              org.biopax.paxtools.proxy.level2.processProxy
                  org.biopax.paxtools.proxy.level2.interactionProxy
                      org.biopax.paxtools.proxy.level2.physicalInteractionProxy
                          org.biopax.paxtools.proxy.level2.controlProxy
                              org.biopax.paxtools.proxy.level2.catalysisProxy

All Implemented Interfaces:

java.io.Serializable, BioPAXElement, catalysis, control, entity, interaction, InteractionParticipant, pathwayComponent, physicalInteraction, process, XReferrable

@Indexed(index="paxtools")
public class catalysisProxy
extends controlProxy
implements catalysis, java.io.Serializable

Proxy for catalysis

See Also:

Serialized Form

Field Summary

Fields inherited from class org.biopax.paxtools.proxy.level2.BioPAXElementProxy

SEARCH_FIELD_AVAILABILITY, SEARCH_FIELD_COMMENT, SEARCH_FIELD_EC_NUMBER, SEARCH_FIELD_KEYWORD, SEARCH_FIELD_NAME, SEARCH_FIELD_SEQUENCE, SEARCH_FIELD_SYNONYMS, SEARCH_FIELD_TERM, SEARCH_FIELD_XREF_DB, SEARCH_FIELD_XREF_ID, SEARCH_INDEX_NAME

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

catalysisProxy()

Method Summary

void	addCOFACTOR(physicalEntityParticipant COFACTOR)
java.util.Set<physicalEntityParticipant>	getCOFACTOR()
Direction	getDIRECTION()
void	removeCOFACTOR(physicalEntityParticipant COFACTOR)
void	setCOFACTOR(java.util.Set<physicalEntityParticipant> COFACTOR)
void	setDIRECTION(Direction DIRECTION)

Methods inherited from class org.biopax.paxtools.proxy.level2.controlProxy

addCONTROLLED, addCONTROLLER, getCONTROL_TYPE, getCONTROLLED, getCONTROLLER, removeCONTROLLED, removeCONTROLLER, setCONTROL_TYPE, setCONTROLLED, setCONTROLLER

Methods inherited from class org.biopax.paxtools.proxy.level2.physicalInteractionProxy

addINTERACTION_TYPE, call_setPARTICIPANTS_x, getINTERACTION_TYPE, removeINTERACTION_TYPE, setINTERACTION_TYPE

Methods inherited from class org.biopax.paxtools.proxy.level2.interactionProxy

addPARTICIPANTS, getPARTICIPANTS_x, getPARTICIPANTS, removePARTICIPANTS, setPARTICIPANTS_x, setPARTICIPANTS

Methods inherited from class org.biopax.paxtools.proxy.level2.processProxy

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isPATHWAY_COMPONENTSof, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from class org.biopax.paxtools.proxy.level2.entityProxy

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, addXREF, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, getXREF, isPARTICIPANTSof, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, removeXREF, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS, setXREF

Methods inherited from class org.biopax.paxtools.proxy.level2.BioPAXElementProxy

addCOMMENT, doubleSetToStringSet, doubleToString, equals, equivalenceCode, floatToString, getCOMMENT, getModelInterface, getProxyId, getRDFId, hashCode, isEquivalent, removeCOMMENT, setCOMMENT, setProxyId, setRDFId, stringSetToDoubleSet, stringToDouble, stringToFloat

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.control

addCONTROLLED, addCONTROLLER, getCONTROL_TYPE, getCONTROLLED, getCONTROLLER, removeCONTROLLED, removeCONTROLLER, setCONTROL_TYPE, setCONTROLLED, setCONTROLLER

Methods inherited from interface org.biopax.paxtools.model.level2.physicalInteraction

addINTERACTION_TYPE, getINTERACTION_TYPE, removeINTERACTION_TYPE, setINTERACTION_TYPE

Methods inherited from interface org.biopax.paxtools.model.level2.interaction

addPARTICIPANTS, getPARTICIPANTS, removePARTICIPANTS, setPARTICIPANTS

Methods inherited from interface org.biopax.paxtools.model.level2.process

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.pathwayComponent

isPATHWAY_COMPONENTSof

Constructor Detail

catalysisProxy

public catalysisProxy()

Method Detail

addCOFACTOR

public void addCOFACTOR(physicalEntityParticipant COFACTOR)

Specified by:

addCOFACTOR in interface catalysis

getCOFACTOR

public java.util.Set<physicalEntityParticipant> getCOFACTOR()

Specified by:

getCOFACTOR in interface catalysis

getDIRECTION

public Direction getDIRECTION()

Specified by:

getDIRECTION in interface catalysis

removeCOFACTOR

public void removeCOFACTOR(physicalEntityParticipant COFACTOR)

Specified by:

removeCOFACTOR in interface catalysis

setCOFACTOR

public void setCOFACTOR(java.util.Set<physicalEntityParticipant> COFACTOR)

Specified by:

setCOFACTOR in interface catalysis

setDIRECTION

public void setDIRECTION(Direction DIRECTION)

Specified by:

setDIRECTION in interface catalysis