org.biopax.paxtools.proxy.level2
Class biochemicalReactionProxy

java.lang.Object
  org.biopax.paxtools.proxy.level2.BioPAXElementProxy
      org.biopax.paxtools.proxy.level2.InteractionParticipantProxy
          org.biopax.paxtools.proxy.level2.entityProxy
              org.biopax.paxtools.proxy.level2.processProxy
                  org.biopax.paxtools.proxy.level2.interactionProxy
                      org.biopax.paxtools.proxy.level2.physicalInteractionProxy
                          org.biopax.paxtools.proxy.level2.conversionProxy
                              org.biopax.paxtools.proxy.level2.biochemicalReactionProxy

All Implemented Interfaces:

java.io.Serializable, biochemicalReaction, BioPAXElement, conversion, entity, interaction, InteractionParticipant, pathwayComponent, physicalInteraction, process, XReferrable

Direct Known Subclasses:

transportWithBiochemicalReactionProxy

@Indexed(index="paxtools")
public class biochemicalReactionProxy
extends conversionProxy
implements biochemicalReaction, java.io.Serializable

Proxy for biochemicalReaction

See Also:

Serialized Form

Field Summary

Fields inherited from class org.biopax.paxtools.proxy.level2.BioPAXElementProxy

SEARCH_FIELD_AVAILABILITY, SEARCH_FIELD_COMMENT, SEARCH_FIELD_EC_NUMBER, SEARCH_FIELD_KEYWORD, SEARCH_FIELD_NAME, SEARCH_FIELD_SEQUENCE, SEARCH_FIELD_SYNONYMS, SEARCH_FIELD_TERM, SEARCH_FIELD_XREF_DB, SEARCH_FIELD_XREF_ID, SEARCH_INDEX_NAME

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

biochemicalReactionProxy()

Method Summary

void	addDELTA_G(deltaGprimeO DELTA_G)
void	addDELTA_H(double DELTA_H)
void	addDELTA_S(double DELTA_S)
void	addEC_NUMBER(java.lang.String EC_NUMBER)
void	addKEQ(kPrime KEQ)
java.util.Set<deltaGprimeO>	getDELTA_G()
protected java.util.Set<java.lang.String>	getDELTA_H_x()
java.util.Set<java.lang.Double>	getDELTA_H()
java.util.Set<java.lang.String>	getDELTA_S_x()
java.util.Set<java.lang.Double>	getDELTA_S()
java.util.Set<java.lang.String>	getEC_NUMBER()
java.util.Set<kPrime>	getKEQ()
void	removeDELTA_G(deltaGprimeO DELTA_G)
void	removeDELTA_H(double DELTA_H)
void	removeDELTA_S(double DELTA_S)
void	removeEC_NUMBER(java.lang.String EC_NUMBER)
void	removeKEQ(kPrime KEQ)
void	setDELTA_G(java.util.Set<deltaGprimeO> DELTA_G)
protected void	setDELTA_H_x(java.util.Set<java.lang.String> ss)
void	setDELTA_H(java.util.Set<java.lang.Double> DELTA_H)
void	setDELTA_S_x(java.util.Set<java.lang.String> ss)
void	setDELTA_S(java.util.Set<java.lang.Double> DELTA_S)
void	setEC_NUMBER(java.util.Set<java.lang.String> EC_NUMBER)
void	setKEQ(java.util.Set<kPrime> KEQ)

Methods inherited from class org.biopax.paxtools.proxy.level2.conversionProxy

addLEFT, addRIGHT, getLEFT_x, getLEFT, getRIGHT_x, getRIGHT, getSPONTANEOUS, removeLEFT, removeRIGHT, setLEFT_x, setLEFT, setRIGHT_x, setRIGHT, setSPONTANEOUS

Methods inherited from class org.biopax.paxtools.proxy.level2.physicalInteractionProxy

addINTERACTION_TYPE, call_setPARTICIPANTS_x, getINTERACTION_TYPE, removeINTERACTION_TYPE, setINTERACTION_TYPE

Methods inherited from class org.biopax.paxtools.proxy.level2.interactionProxy

addPARTICIPANTS, getPARTICIPANTS_x, getPARTICIPANTS, removePARTICIPANTS, setPARTICIPANTS_x, setPARTICIPANTS

Methods inherited from class org.biopax.paxtools.proxy.level2.processProxy

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isPATHWAY_COMPONENTSof, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from class org.biopax.paxtools.proxy.level2.entityProxy

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, addXREF, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, getXREF, isPARTICIPANTSof, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, removeXREF, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS, setXREF

Methods inherited from class org.biopax.paxtools.proxy.level2.BioPAXElementProxy

addCOMMENT, doubleSetToStringSet, doubleToString, equals, equivalenceCode, floatToString, getCOMMENT, getModelInterface, getProxyId, getRDFId, hashCode, isEquivalent, removeCOMMENT, setCOMMENT, setProxyId, setRDFId, stringSetToDoubleSet, stringToDouble, stringToFloat

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.conversion

addLEFT, addRIGHT, getLEFT, getRIGHT, getSPONTANEOUS, removeLEFT, removeRIGHT, setLEFT, setRIGHT, setSPONTANEOUS

Methods inherited from interface org.biopax.paxtools.model.level2.physicalInteraction

addINTERACTION_TYPE, getINTERACTION_TYPE, removeINTERACTION_TYPE, setINTERACTION_TYPE

Methods inherited from interface org.biopax.paxtools.model.level2.interaction

addPARTICIPANTS, getPARTICIPANTS, removePARTICIPANTS, setPARTICIPANTS

Methods inherited from interface org.biopax.paxtools.model.level2.process

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.pathwayComponent

isPATHWAY_COMPONENTSof

Constructor Detail

biochemicalReactionProxy

public biochemicalReactionProxy()

Method Detail

addDELTA_G

public void addDELTA_G(deltaGprimeO DELTA_G)

Specified by:

addDELTA_G in interface biochemicalReaction

addDELTA_H

public void addDELTA_H(double DELTA_H)

Specified by:

addDELTA_H in interface biochemicalReaction

addDELTA_S

public void addDELTA_S(double DELTA_S)

Specified by:

addDELTA_S in interface biochemicalReaction

addEC_NUMBER

public void addEC_NUMBER(java.lang.String EC_NUMBER)

Specified by:

addEC_NUMBER in interface biochemicalReaction

addKEQ

public void addKEQ(kPrime KEQ)

Specified by:

addKEQ in interface biochemicalReaction

getDELTA_G

public java.util.Set<deltaGprimeO> getDELTA_G()

Specified by:

getDELTA_G in interface biochemicalReaction

getDELTA_H

public java.util.Set<java.lang.Double> getDELTA_H()

Specified by:

getDELTA_H in interface biochemicalReaction

setDELTA_H

public void setDELTA_H(java.util.Set<java.lang.Double> DELTA_H)

Specified by:

setDELTA_H in interface biochemicalReaction

getDELTA_H_x

protected java.util.Set<java.lang.String> getDELTA_H_x()

setDELTA_H_x

protected void setDELTA_H_x(java.util.Set<java.lang.String> ss)

getDELTA_S

public java.util.Set<java.lang.Double> getDELTA_S()

Specified by:

getDELTA_S in interface biochemicalReaction

setDELTA_S

public void setDELTA_S(java.util.Set<java.lang.Double> DELTA_S)

Specified by:

setDELTA_S in interface biochemicalReaction

getDELTA_S_x

public java.util.Set<java.lang.String> getDELTA_S_x()

setDELTA_S_x

public void setDELTA_S_x(java.util.Set<java.lang.String> ss)

getEC_NUMBER

@FieldBridge(impl=StringSetBridge.class)
@Field(name="ec_number",
       index=TOKENIZED)
public java.util.Set<java.lang.String> getEC_NUMBER()

Specified by:

getEC_NUMBER in interface biochemicalReaction

getKEQ

public java.util.Set<kPrime> getKEQ()

Specified by:

getKEQ in interface biochemicalReaction

removeDELTA_G

public void removeDELTA_G(deltaGprimeO DELTA_G)

Specified by:

removeDELTA_G in interface biochemicalReaction

removeDELTA_H

public void removeDELTA_H(double DELTA_H)

Specified by:

removeDELTA_H in interface biochemicalReaction

removeDELTA_S

public void removeDELTA_S(double DELTA_S)

Specified by:

removeDELTA_S in interface biochemicalReaction

removeEC_NUMBER

public void removeEC_NUMBER(java.lang.String EC_NUMBER)

Specified by:

removeEC_NUMBER in interface biochemicalReaction

removeKEQ

public void removeKEQ(kPrime KEQ)

Specified by:

removeKEQ in interface biochemicalReaction

setDELTA_G

public void setDELTA_G(java.util.Set<deltaGprimeO> DELTA_G)

Specified by:

setDELTA_G in interface biochemicalReaction

setEC_NUMBER

public void setEC_NUMBER(java.util.Set<java.lang.String> EC_NUMBER)

Specified by:

setEC_NUMBER in interface biochemicalReaction

setKEQ

public void setKEQ(java.util.Set<kPrime> KEQ)

Specified by:

setKEQ in interface biochemicalReaction