org.biopax.paxtools.proxy.level2
Class BioPAXElementProxy

java.lang.Object
  org.biopax.paxtools.proxy.level2.BioPAXElementProxy

All Implemented Interfaces:

java.io.Serializable, BioPAXElement

Direct Known Subclasses:

InteractionParticipantProxy, pathwayComponentProxy, utilityClassProxy

@Indexed(index="paxtools")
public abstract class BioPAXElementProxy
extends java.lang.Object
implements BioPAXElement, java.io.Serializable

Proxy for BioPAXElement

See Also:

Serialized Form

Field Summary

static java.lang.String	SEARCH_FIELD_AVAILABILITY
static java.lang.String	SEARCH_FIELD_COMMENT
static java.lang.String	SEARCH_FIELD_EC_NUMBER
static java.lang.String	SEARCH_FIELD_KEYWORD
static java.lang.String	SEARCH_FIELD_NAME
static java.lang.String	SEARCH_FIELD_SEQUENCE
static java.lang.String	SEARCH_FIELD_SYNONYMS
static java.lang.String	SEARCH_FIELD_TERM
static java.lang.String	SEARCH_FIELD_XREF_DB
static java.lang.String	SEARCH_FIELD_XREF_ID
static java.lang.String	SEARCH_INDEX_NAME

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

protected

BioPAXElementProxy()

Method Summary

void	addCOMMENT(java.lang.String COMMENT)
protected java.util.Set<java.lang.String>	doubleSetToStringSet(java.util.Set<java.lang.Double> ds)
protected java.lang.String	doubleToString(java.lang.Double d)
boolean	equals(java.lang.Object o)
int	equivalenceCode()
protected java.lang.String	floatToString(java.lang.Float f)
java.util.Set<java.lang.String>	getCOMMENT()
java.lang.Class	getModelInterface()
long	getProxyId()
java.lang.String	getRDFId()
int	hashCode()
boolean	isEquivalent(BioPAXElement element)
void	removeCOMMENT(java.lang.String COMMENT)
void	setCOMMENT(java.util.Set<java.lang.String> COMMENT)
void	setProxyId(long value)
void	setRDFId(java.lang.String id)
protected java.util.Set<java.lang.Double>	stringSetToDoubleSet(java.util.Set<java.lang.String> ss)
protected java.lang.Double	stringToDouble(java.lang.String s)
protected java.lang.Float	stringToFloat(java.lang.String s)

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Field Detail

SEARCH_INDEX_NAME

public static final java.lang.String SEARCH_INDEX_NAME

See Also:

Constant Field Values

SEARCH_FIELD_KEYWORD

public static final java.lang.String SEARCH_FIELD_KEYWORD

See Also:

Constant Field Values

SEARCH_FIELD_NAME

public static final java.lang.String SEARCH_FIELD_NAME

See Also:

Constant Field Values

SEARCH_FIELD_SYNONYMS

public static final java.lang.String SEARCH_FIELD_SYNONYMS

See Also:

Constant Field Values

SEARCH_FIELD_TERM

public static final java.lang.String SEARCH_FIELD_TERM

See Also:

Constant Field Values

SEARCH_FIELD_EC_NUMBER

public static final java.lang.String SEARCH_FIELD_EC_NUMBER

See Also:

Constant Field Values

SEARCH_FIELD_SEQUENCE

public static final java.lang.String SEARCH_FIELD_SEQUENCE

See Also:

Constant Field Values

SEARCH_FIELD_XREF_DB

public static final java.lang.String SEARCH_FIELD_XREF_DB

See Also:

Constant Field Values

SEARCH_FIELD_XREF_ID

public static final java.lang.String SEARCH_FIELD_XREF_ID

See Also:

Constant Field Values

SEARCH_FIELD_AVAILABILITY

public static final java.lang.String SEARCH_FIELD_AVAILABILITY

See Also:

Constant Field Values

SEARCH_FIELD_COMMENT

public static final java.lang.String SEARCH_FIELD_COMMENT

See Also:

Constant Field Values

Constructor Detail

BioPAXElementProxy

protected BioPAXElementProxy()

Method Detail

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

getProxyId

@DocumentId
public long getProxyId()

setProxyId

public void setProxyId(long value)

getRDFId

public java.lang.String getRDFId()

Specified by:

getRDFId in interface BioPAXElement

getModelInterface

public java.lang.Class getModelInterface()

Specified by:

getModelInterface in interface BioPAXElement

getCOMMENT

@FieldBridge(impl=StringSetBridge.class)
@Field(name="comment",
       index=TOKENIZED)
public java.util.Set<java.lang.String> getCOMMENT()

Specified by:

getCOMMENT in interface BioPAXElement

addCOMMENT

public void addCOMMENT(java.lang.String COMMENT)

Specified by:

addCOMMENT in interface BioPAXElement

removeCOMMENT

public void removeCOMMENT(java.lang.String COMMENT)

Specified by:

removeCOMMENT in interface BioPAXElement

setCOMMENT

public void setCOMMENT(java.util.Set<java.lang.String> COMMENT)

Specified by:

setCOMMENT in interface BioPAXElement

setRDFId

public void setRDFId(java.lang.String id)

Specified by:

setRDFId in interface BioPAXElement

equivalenceCode

public int equivalenceCode()

Specified by:

equivalenceCode in interface BioPAXElement

isEquivalent

public boolean isEquivalent(BioPAXElement element)

Specified by:

isEquivalent in interface BioPAXElement

doubleToString

protected java.lang.String doubleToString(java.lang.Double d)

stringToDouble

protected java.lang.Double stringToDouble(java.lang.String s)

doubleSetToStringSet

protected java.util.Set<java.lang.String> doubleSetToStringSet(java.util.Set<java.lang.Double> ds)

stringSetToDoubleSet

protected java.util.Set<java.lang.Double> stringSetToDoubleSet(java.util.Set<java.lang.String> ss)

floatToString

protected java.lang.String floatToString(java.lang.Float f)

stringToFloat

protected java.lang.Float stringToFloat(java.lang.String s)