org.biopax.paxtools.persistence.level2
Class HiRDBSession

java.lang.Object
  org.biopax.paxtools.persistence.level2.HiRDBSession

public class HiRDBSession
extends java.lang.Object

RDB hibernation context class

Constructor Summary

HiRDBSession()
contructor

HiRDBSession(HiRDBConnect connect)
contructor

Method Summary

void	close() close entity manager
InteractionSearch	createInteractionSearch() create interaction search
KeywordSearch	createKeywordSearch() create keyword search
MiscSearch	createMiscSearch() create misc search
PathwaySearch	createPathwaySearch() create pathway search
PhysicalEntitySearch	createPhysicalEntitySearch() create physicalEntity search
HiRDBConnect	getConnect() connect
BioPAXElement	getElementByRDFID(java.lang.String rdfID) get element by rdf:ID
javax.persistence.EntityManager	getEntityManager() get entity manager
boolean	open() open entity manager
void	setConnect(HiRDBConnect connect) connect
boolean	setup() setup

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HiRDBSession

public HiRDBSession()

contructor

HiRDBSession

public HiRDBSession(HiRDBConnect connect)

contructor

Parameters:

connect -

Method Detail

setConnect

public void setConnect(HiRDBConnect connect)

connect

getConnect

public HiRDBConnect getConnect()

connect

setup

public boolean setup()

setup

open

public boolean open()

open entity manager

close

public void close()

close entity manager

getEntityManager

public javax.persistence.EntityManager getEntityManager()

get entity manager

getElementByRDFID

public BioPAXElement getElementByRDFID(java.lang.String rdfID)

get element by rdf:ID

Parameters:

rdfID - rdf:ID

Returns:

BioPAXElement

createKeywordSearch

public KeywordSearch createKeywordSearch()

create keyword search

Returns:

KeywordSearch

createMiscSearch

public MiscSearch createMiscSearch()

create misc search

Returns:

MiscSearch

createPathwaySearch

public PathwaySearch createPathwaySearch()

create pathway search

Returns:

PathwaySearch

createInteractionSearch

public InteractionSearch createInteractionSearch()

create interaction search

Returns:

InteractionSearch

createPhysicalEntitySearch

public PhysicalEntitySearch createPhysicalEntitySearch()

create physicalEntity search

Returns:

PhysicalEntitySearch