org.biopax.paxtools.model.level2
Interface process

All Superinterfaces:

BioPAXElement, entity, InteractionParticipant, pathwayComponent, XReferrable

All Known Subinterfaces:

biochemicalReaction, catalysis, complexAssembly, control, conversion, interaction, modulation, pathway, physicalInteraction, transport, transportWithBiochemicalReaction

All Known Implementing Classes:

biochemicalReactionImpl, biochemicalReactionProxy, catalysisImpl, catalysisProxy, complexAssemblyImpl, complexAssemblyProxy, controlImpl, controlProxy, conversionImpl, conversionProxy, interactionAdapter, interactionImpl, interactionProxy, modulationImpl, modulationProxy, pathwayImpl, pathwayProxy, physicalInteractionAdapter, physicalInteractionImpl, physicalInteractionProxy, processImpl, processProxy, transportImpl, transportProxy, transportWithBiochemicalReactionImpl, transportWithBiochemicalReactionProxy

public interface process
extends entity, pathwayComponent

Tagging interface for entities that needs evidence and can be targeted by a control : Pathway and Interaction

Field Summary

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Method Summary

void	addEVIDENCE(evidence EVIDENCE)
java.util.Set<evidence>	getEVIDENCE()
java.util.Set<control>	isCONTROLLEDOf()
java.util.Set<pathwayStep>	isSTEP_INTERACTIONSOf()
void	removeEVIDENCE(evidence EVIDENCE)
void	setEVIDENCE(java.util.Set<evidence> EVIDENCE)

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.pathwayComponent

isPATHWAY_COMPONENTSof

Method Detail

addEVIDENCE

void addEVIDENCE(evidence EVIDENCE)

getEVIDENCE

java.util.Set<evidence> getEVIDENCE()

isCONTROLLEDOf

java.util.Set<control> isCONTROLLEDOf()

isSTEP_INTERACTIONSOf

java.util.Set<pathwayStep> isSTEP_INTERACTIONSOf()

removeEVIDENCE

void removeEVIDENCE(evidence EVIDENCE)

setEVIDENCE

void setEVIDENCE(java.util.Set<evidence> EVIDENCE)