org.biopax.paxtools.model.level2
Interface pathway

All Superinterfaces:

BioPAXElement, entity, InteractionParticipant, pathwayComponent, process, XReferrable

All Known Implementing Classes:

pathwayImpl, pathwayProxy

public interface pathway
extends process

Field Summary

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Method Summary

void	addPATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT)
bioSource	getORGANISM()
java.util.Set<pathwayComponent>	getPATHWAY_COMPONENTS()
void	removePATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT)
void	setORGANISM(bioSource ORGANISM)
void	setPATHWAY_COMPONENTS(java.util.Set<pathwayComponent> PATHWAY_COMPONENTS)

Methods inherited from interface org.biopax.paxtools.model.level2.process

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.pathwayComponent

isPATHWAY_COMPONENTSof

Method Detail

addPATHWAY_COMPONENTS

void addPATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT)

getORGANISM

bioSource getORGANISM()

getPATHWAY_COMPONENTS

java.util.Set<pathwayComponent> getPATHWAY_COMPONENTS()

removePATHWAY_COMPONENTS

void removePATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT)

setORGANISM

void setORGANISM(bioSource ORGANISM)

setPATHWAY_COMPONENTS

void setPATHWAY_COMPONENTS(java.util.Set<pathwayComponent> PATHWAY_COMPONENTS)