Hierarchy For Package org.biopax.paxtools.model.level2

Package Hierarchies:

All Packages

Class Hierarchy

• java.lang.Object
  • java.util.Dictionary<K,V>
    • java.util.Hashtable<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
      • java.util.Properties
        • org.biopax.paxtools.model.level2.PaxtoolsProperties

Interface Hierarchy

• org.biopax.paxtools.model.level2.BioPAXElement
  • org.biopax.paxtools.model.level2.entity (also extends org.biopax.paxtools.model.level2.InteractionParticipant, org.biopax.paxtools.model.level2.XReferrable)
    • org.biopax.paxtools.model.level2.physicalEntity
      • org.biopax.paxtools.model.level2.complex
      • org.biopax.paxtools.model.level2.sequenceEntity
        • org.biopax.paxtools.model.level2.dna
        • org.biopax.paxtools.model.level2.protein
        • org.biopax.paxtools.model.level2.rna
      • org.biopax.paxtools.model.level2.smallMolecule
    • org.biopax.paxtools.model.level2.process (also extends org.biopax.paxtools.model.level2.pathwayComponent)
      • org.biopax.paxtools.model.level2.interaction
        • org.biopax.paxtools.model.level2.physicalInteraction
          • org.biopax.paxtools.model.level2.control
            • org.biopax.paxtools.model.level2.catalysis
            • org.biopax.paxtools.model.level2.modulation
          • org.biopax.paxtools.model.level2.conversion
            • org.biopax.paxtools.model.level2.biochemicalReaction
              • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.transport)
            • org.biopax.paxtools.model.level2.complexAssembly
            • org.biopax.paxtools.model.level2.transport
              • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.biochemicalReaction)
      • org.biopax.paxtools.model.level2.pathway
  • org.biopax.paxtools.model.level2.InteractionParticipant
    • org.biopax.paxtools.model.level2.entity (also extends org.biopax.paxtools.model.level2.BioPAXElement, org.biopax.paxtools.model.level2.XReferrable)
      • org.biopax.paxtools.model.level2.physicalEntity
        • org.biopax.paxtools.model.level2.complex
        • org.biopax.paxtools.model.level2.sequenceEntity
          • org.biopax.paxtools.model.level2.dna
          • org.biopax.paxtools.model.level2.protein
          • org.biopax.paxtools.model.level2.rna
        • org.biopax.paxtools.model.level2.smallMolecule
      • org.biopax.paxtools.model.level2.process (also extends org.biopax.paxtools.model.level2.pathwayComponent)
        • org.biopax.paxtools.model.level2.interaction
          • org.biopax.paxtools.model.level2.physicalInteraction
            • org.biopax.paxtools.model.level2.control
              • org.biopax.paxtools.model.level2.catalysis
              • org.biopax.paxtools.model.level2.modulation
            • org.biopax.paxtools.model.level2.conversion
              • org.biopax.paxtools.model.level2.biochemicalReaction
                • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.transport)
              • org.biopax.paxtools.model.level2.complexAssembly
              • org.biopax.paxtools.model.level2.transport
                • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.biochemicalReaction)
        • org.biopax.paxtools.model.level2.pathway
    • org.biopax.paxtools.model.level2.physicalEntityParticipant (also extends org.biopax.paxtools.model.level2.utilityClass)
      • org.biopax.paxtools.model.level2.sequenceParticipant
  • org.biopax.paxtools.model.level2.pathwayComponent
    • org.biopax.paxtools.model.level2.pathwayStep (also extends org.biopax.paxtools.model.level2.utilityClass)
    • org.biopax.paxtools.model.level2.process (also extends org.biopax.paxtools.model.level2.entity)
      • org.biopax.paxtools.model.level2.interaction
        • org.biopax.paxtools.model.level2.physicalInteraction
          • org.biopax.paxtools.model.level2.control
            • org.biopax.paxtools.model.level2.catalysis
            • org.biopax.paxtools.model.level2.modulation
          • org.biopax.paxtools.model.level2.conversion
            • org.biopax.paxtools.model.level2.biochemicalReaction
              • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.transport)
            • org.biopax.paxtools.model.level2.complexAssembly
            • org.biopax.paxtools.model.level2.transport
              • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.biochemicalReaction)
      • org.biopax.paxtools.model.level2.pathway
  • org.biopax.paxtools.model.level2.utilityClass
    • org.biopax.paxtools.model.level2.chemicalStructure
    • org.biopax.paxtools.model.level2.confidence (also extends org.biopax.paxtools.model.level2.XReferrable)
    • org.biopax.paxtools.model.level2.deltaGprimeO
    • org.biopax.paxtools.model.level2.evidence (also extends org.biopax.paxtools.model.level2.XReferrable)
    • org.biopax.paxtools.model.level2.experimentalForm
    • org.biopax.paxtools.model.level2.externalReferenceUtilityClass
      • org.biopax.paxtools.model.level2.bioSource
      • org.biopax.paxtools.model.level2.dataSource (also extends org.biopax.paxtools.model.level2.XReferrable)
      • org.biopax.paxtools.model.level2.openControlledVocabulary (also extends org.biopax.paxtools.model.level2.XReferrable)
      • org.biopax.paxtools.model.level2.xref
        • org.biopax.paxtools.model.level2.publicationXref
        • org.biopax.paxtools.model.level2.relationshipXref
        • org.biopax.paxtools.model.level2.unificationXref
    • org.biopax.paxtools.model.level2.kPrime
    • org.biopax.paxtools.model.level2.pathwayStep (also extends org.biopax.paxtools.model.level2.pathwayComponent)
    • org.biopax.paxtools.model.level2.physicalEntityParticipant (also extends org.biopax.paxtools.model.level2.InteractionParticipant)
      • org.biopax.paxtools.model.level2.sequenceParticipant
    • org.biopax.paxtools.model.level2.sequenceFeature (also extends org.biopax.paxtools.model.level2.XReferrable)
    • org.biopax.paxtools.model.level2.sequenceLocation
      • org.biopax.paxtools.model.level2.sequenceInterval
      • org.biopax.paxtools.model.level2.sequenceSite
  • org.biopax.paxtools.model.level2.XReferrable
    • org.biopax.paxtools.model.level2.confidence (also extends org.biopax.paxtools.model.level2.utilityClass)
    • org.biopax.paxtools.model.level2.dataSource (also extends org.biopax.paxtools.model.level2.externalReferenceUtilityClass)
    • org.biopax.paxtools.model.level2.entity (also extends org.biopax.paxtools.model.level2.BioPAXElement, org.biopax.paxtools.model.level2.InteractionParticipant)
      • org.biopax.paxtools.model.level2.physicalEntity
        • org.biopax.paxtools.model.level2.complex
        • org.biopax.paxtools.model.level2.sequenceEntity
          • org.biopax.paxtools.model.level2.dna
          • org.biopax.paxtools.model.level2.protein
          • org.biopax.paxtools.model.level2.rna
        • org.biopax.paxtools.model.level2.smallMolecule
      • org.biopax.paxtools.model.level2.process (also extends org.biopax.paxtools.model.level2.pathwayComponent)
        • org.biopax.paxtools.model.level2.interaction
          • org.biopax.paxtools.model.level2.physicalInteraction
            • org.biopax.paxtools.model.level2.control
              • org.biopax.paxtools.model.level2.catalysis
              • org.biopax.paxtools.model.level2.modulation
            • org.biopax.paxtools.model.level2.conversion
              • org.biopax.paxtools.model.level2.biochemicalReaction
                • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.transport)
              • org.biopax.paxtools.model.level2.complexAssembly
              • org.biopax.paxtools.model.level2.transport
                • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.biochemicalReaction)
        • org.biopax.paxtools.model.level2.pathway
    • org.biopax.paxtools.model.level2.evidence (also extends org.biopax.paxtools.model.level2.utilityClass)
    • org.biopax.paxtools.model.level2.openControlledVocabulary (also extends org.biopax.paxtools.model.level2.externalReferenceUtilityClass)
    • org.biopax.paxtools.model.level2.sequenceFeature (also extends org.biopax.paxtools.model.level2.utilityClass)
• org.biopax.paxtools.model.level2.BioPAXFactory
• org.biopax.paxtools.model.level2.Model

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.biopax.paxtools.model.level2.ControlType
    • org.biopax.paxtools.model.level2.Direction
    • org.biopax.paxtools.model.level2.PositionStatusType
    • org.biopax.paxtools.model.level2.SpontaneousType