Package org.biopax.paxtools.model.level2

Interface Summary

biochemicalReaction
BioPAXElement
BioPAXFactory
bioSource
catalysis
chemicalStructure
complex
complexAssembly
confidence
control
conversion
dataSource	XREF Should be only unification and publication xrefs
deltaGprimeO
dna
entity	This class represents a discrete biological unit used when describing pathways.
evidence
experimentalForm
externalReferenceUtilityClass
interaction
InteractionParticipant	marker interface for entities and PEPs
kPrime
Model	This is the interface for container classes for BioPAX models.
modulation	get controlled should be catalysis
openControlledVocabulary
pathway
pathwayComponent	Interface for pathway steps and processes
pathwayStep	This represents a set of pathway events.
physicalEntity
physicalEntityParticipant
physicalInteraction
process	Tagging interface for entities that needs evidence and can be targeted by a control : Pathway and Interaction
protein
publicationXref
relationshipXref
rna
sequenceEntity	User: root Date: Aug 7, 2006 Time: 4:51:19 PM_DOT
sequenceFeature
sequenceInterval
sequenceLocation
sequenceParticipant
sequenceSite
smallMolecule
transport
transportWithBiochemicalReaction
unificationXref
utilityClass
xref
XReferrable

Class Summary

PaxtoolsProperties

Enum Summary

ControlType	User: root Date: Aug 1, 2006 Time: 5:37:34 PM_DOT
Direction	Catalysis direction controlled vocabulary
PositionStatusType
SpontaneousType