org.biopax.paxtools.model.level2
Interface catalysis

All Superinterfaces:

BioPAXElement, control, entity, interaction, InteractionParticipant, pathwayComponent, physicalInteraction, process, XReferrable

All Known Implementing Classes:

catalysisImpl, catalysisProxy

public interface catalysis
extends control

Field Summary

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Method Summary

void	addCOFACTOR(physicalEntityParticipant COFACTOR)
java.util.Set<physicalEntityParticipant>	getCOFACTOR()
Direction	getDIRECTION()
void	removeCOFACTOR(physicalEntityParticipant COFACTOR)
void	setCOFACTOR(java.util.Set<physicalEntityParticipant> COFACTOR)
void	setDIRECTION(Direction DIRECTION)

Methods inherited from interface org.biopax.paxtools.model.level2.control

addCONTROLLED, addCONTROLLER, getCONTROL_TYPE, getCONTROLLED, getCONTROLLER, removeCONTROLLED, removeCONTROLLER, setCONTROL_TYPE, setCONTROLLED, setCONTROLLER

Methods inherited from interface org.biopax.paxtools.model.level2.physicalInteraction

addINTERACTION_TYPE, getINTERACTION_TYPE, removeINTERACTION_TYPE, setINTERACTION_TYPE

Methods inherited from interface org.biopax.paxtools.model.level2.interaction

addPARTICIPANTS, getPARTICIPANTS, removePARTICIPANTS, setPARTICIPANTS

Methods inherited from interface org.biopax.paxtools.model.level2.process

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.pathwayComponent

isPATHWAY_COMPONENTSof

Method Detail

addCOFACTOR

void addCOFACTOR(physicalEntityParticipant COFACTOR)

getCOFACTOR

java.util.Set<physicalEntityParticipant> getCOFACTOR()

getDIRECTION

Direction getDIRECTION()

removeCOFACTOR

void removeCOFACTOR(physicalEntityParticipant COFACTOR)

setCOFACTOR

void setCOFACTOR(java.util.Set<physicalEntityParticipant> COFACTOR)

setDIRECTION

void setDIRECTION(Direction DIRECTION)