org.biopax.paxtools.model.level2
Interface BioPAXFactory

All Known Implementing Classes:

BioPAXFactoryForPersistence, BioPAXFactoryImpl

public interface BioPAXFactory

Method Summary

biochemicalReaction	createBiochemicalReaction()
bioSource	createBioSource()
catalysis	createCatalysis()
chemicalStructure	createChemicalStructure()
complex	createComplex()
complexAssembly	createComplexAssembly()
confidence	createConfidence()
control	createControl()
conversion	createConversion()
dataSource	createDataSource()
deltaGprimeO	createDeltaGprimeO()
dna	createDna()
evidence	createEvidence()
experimentalForm	createExperimentalForm()
interaction	createInteraction()
kPrime	createKPrime()
Model	createModel()
modulation	createModulation()
openControlledVocabulary	createOpenControlledVocabulary()
pathway	createPathway()
pathwayStep	createPathwayStep()
physicalEntity	createPhysicalEntity()
physicalEntityParticipant	createPhysicalEntityParticipant()
physicalInteraction	createPhysicalInteraction()
protein	createProtein()
publicationXref	createPublicationXref()
relationshipXref	createRelationshipXref()
rna	createRna()
sequenceFeature	createSequenceFeature()
sequenceInterval	createSequenceInterval()
sequenceParticipant	createSequenceParticipant()
sequenceSite	createSequenceSite()
smallMolecule	createSmallMolecule()
transport	createTransport()
transportWithBiochemicalReaction	createTransportWithBiochemicalReaction()
unificationXref	createUnificationXref()

Method Detail

createBioSource

bioSource createBioSource()

createBiochemicalReaction

biochemicalReaction createBiochemicalReaction()

createCatalysis

catalysis createCatalysis()

createChemicalStructure

chemicalStructure createChemicalStructure()

createComplex

complex createComplex()

createComplexAssembly

complexAssembly createComplexAssembly()

createConfidence

confidence createConfidence()

createControl

control createControl()

createConversion

conversion createConversion()

createDataSource

dataSource createDataSource()

createDeltaGprimeO

deltaGprimeO createDeltaGprimeO()

createDna

dna createDna()

createEvidence

evidence createEvidence()

createExperimentalForm

experimentalForm createExperimentalForm()

createInteraction

interaction createInteraction()

createKPrime

kPrime createKPrime()

createModel

Model createModel()

createModulation

modulation createModulation()

createOpenControlledVocabulary

openControlledVocabulary createOpenControlledVocabulary()

createPathway

pathway createPathway()

createPathwayStep

pathwayStep createPathwayStep()

createPhysicalEntity

physicalEntity createPhysicalEntity()

createPhysicalEntityParticipant

physicalEntityParticipant createPhysicalEntityParticipant()

createPhysicalInteraction

physicalInteraction createPhysicalInteraction()

createProtein

protein createProtein()

createPublicationXref

publicationXref createPublicationXref()

createRelationshipXref

relationshipXref createRelationshipXref()

createRna

rna createRna()

createSequenceFeature

sequenceFeature createSequenceFeature()

createSequenceInterval

sequenceInterval createSequenceInterval()

createSequenceParticipant

sequenceParticipant createSequenceParticipant()

createSequenceSite

sequenceSite createSequenceSite()

createSmallMolecule

smallMolecule createSmallMolecule()

createTransport

transport createTransport()

createTransportWithBiochemicalReaction

transportWithBiochemicalReaction createTransportWithBiochemicalReaction()

createUnificationXref

unificationXref createUnificationXref()