org.biopax.paxtools.model.level2
Interface BioPAXElement

All Known Subinterfaces:

biochemicalReaction, bioSource, catalysis, chemicalStructure, complex, complexAssembly, confidence, control, conversion, dataSource, deltaGprimeO, dna, entity, evidence, experimentalForm, externalReferenceUtilityClass, interaction, InteractionParticipant, kPrime, modulation, openControlledVocabulary, pathway, pathwayComponent, pathwayStep, physicalEntity, physicalEntityParticipant, physicalInteraction, process, protein, publicationXref, relationshipXref, rna, sequenceEntity, sequenceFeature, sequenceInterval, sequenceLocation, sequenceParticipant, sequenceSite, smallMolecule, transport, transportWithBiochemicalReaction, unificationXref, utilityClass, xref, XReferrable

All Known Implementing Classes:

biochemicalReactionImpl, biochemicalReactionProxy, bioPAXElementImpl, BioPAXElementProxy, bioSourceImpl, bioSourceProxy, catalysisImpl, catalysisProxy, chemicalStructureImpl, chemicalStructureProxy, complexAssemblyImpl, complexAssemblyProxy, complexImpl, complexProxy, confidenceImpl, confidenceProxy, controlImpl, controlProxy, conversionImpl, conversionProxy, dataSourceImpl, dataSourceProxy, deltaGprimeOImpl, deltaGprimeOProxy, dnaImpl, dnaProxy, entityImpl, entityProxy, evidenceImpl, evidenceProxy, experimentalFormImpl, experimentalFormProxy, externalReferenceUtilityClassProxy, interactionAdapter, interactionImpl, InteractionParticipantProxy, InteractionParticipantUtilityClassProxy, interactionProxy, kPrimeImpl, kPrimeProxy, modulationImpl, modulationProxy, openControlledVocabularyImpl, openControlledVocabularyProxy, pathwayComponentProxy, pathwayImpl, pathwayProxy, pathwayStepImpl, pathwayStepProxy, physicalEntityImpl, physicalEntityParticipantImpl, physicalEntityParticipantProxy, physicalEntityProxy, physicalInteractionAdapter, physicalInteractionImpl, physicalInteractionProxy, processImpl, processProxy, proteinImpl, proteinProxy, publicationXrefImpl, publicationXrefProxy, relationshipXrefImpl, relationshipXrefProxy, rnaImpl, rnaProxy, sequenceEntityProxy, sequenceFeatureImpl, sequenceFeatureProxy, sequenceIntervalImpl, sequenceIntervalProxy, sequenceLocationProxy, sequenceParticipantImpl, sequenceParticipantProxy, sequenceSiteImpl, sequenceSiteProxy, smallMoleculeImpl, smallMoleculeProxy, transportImpl, transportProxy, transportWithBiochemicalReactionImpl, transportWithBiochemicalReactionProxy, unificationXrefImpl, unificationXrefProxy, utilityClassProxy, xrefImpl, xrefProxy

public interface BioPAXElement

Field Summary

static double	UNKNOWN_DOUBLE
static float	UNKNOWN_FLOAT
static int	UNKNOWN_INT

Method Summary

void	addCOMMENT(java.lang.String COMMENT)
int	equivalenceCode()
java.util.Set<java.lang.String>	getCOMMENT()
java.lang.Class	getModelInterface()
java.lang.String	getRDFId()
boolean	isEquivalent(BioPAXElement element)
void	removeCOMMENT(java.lang.String COMMENT)
void	setCOMMENT(java.util.Set<java.lang.String> COMMENT)
void	setRDFId(java.lang.String id)

Field Detail

UNKNOWN_DOUBLE

static final double UNKNOWN_DOUBLE

See Also:

Constant Field Values

UNKNOWN_FLOAT

static final float UNKNOWN_FLOAT

See Also:

Constant Field Values

UNKNOWN_INT

static final int UNKNOWN_INT

See Also:

Constant Field Values

Method Detail

addCOMMENT

void addCOMMENT(java.lang.String COMMENT)

getCOMMENT

java.util.Set<java.lang.String> getCOMMENT()

getModelInterface

java.lang.Class getModelInterface()

getRDFId

java.lang.String getRDFId()

removeCOMMENT

void removeCOMMENT(java.lang.String COMMENT)

isEquivalent

boolean isEquivalent(BioPAXElement element)

setCOMMENT

void setCOMMENT(java.util.Set<java.lang.String> COMMENT)

setRDFId

void setRDFId(java.lang.String id)

equivalenceCode

int equivalenceCode()