org.biopax.paxtools.impl.level2
Class sequenceParticipantImpl

java.lang.Object
  org.biopax.paxtools.impl.level2.bioPAXElementImpl
      org.biopax.paxtools.impl.level2.physicalEntityParticipantImpl
          org.biopax.paxtools.impl.level2.sequenceParticipantImpl

All Implemented Interfaces:

BioPAXElement, InteractionParticipant, physicalEntityParticipant, sequenceParticipant, utilityClass

public class sequenceParticipantImpl
extends physicalEntityParticipantImpl
implements sequenceParticipant

Field Summary

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

sequenceParticipantImpl()

Method Summary

void	addSEQUENCE_FEATURE_LIST(sequenceFeature SEQUENCE_FEATURE)
java.lang.Class	getModelInterface()
java.util.Set<sequenceFeature>	getSEQUENCE_FEATURE_LIST()
boolean	isEquivalentState(physicalEntityParticipant pep)
void	removeSEQUENCE_FEATURE_LIST(sequenceFeature SEQUENCE_FEATURE)
void	setSEQUENCE_FEATURE_LIST(java.util.Set<sequenceFeature> SEQUENCE_FEATURE_LIST)
int	stateCode()

Methods inherited from class org.biopax.paxtools.impl.level2.physicalEntityParticipantImpl

equivalenceCode, getCELLULAR_LOCATION, getPHYSICAL_ENTITY, getSTOICHIOMETRIC_COEFFICIENT, isCOMPONENTof, isEquivalent, isPARTICIPANTSof, setCELLULAR_LOCATION, setCOMPONENTSof, setPHYSICAL_ENTITY, setSTOICHIOMETRIC_COEFFICIENT

Methods inherited from class org.biopax.paxtools.impl.level2.bioPAXElementImpl

addCOMMENT, equals, getCOMMENT, getRDFId, hashCode, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.physicalEntityParticipant

getCELLULAR_LOCATION, getPHYSICAL_ENTITY, getSTOICHIOMETRIC_COEFFICIENT, isCOMPONENTof, setCELLULAR_LOCATION, setCOMPONENTSof, setPHYSICAL_ENTITY, setSTOICHIOMETRIC_COEFFICIENT

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Constructor Detail

sequenceParticipantImpl

public sequenceParticipantImpl()

Method Detail

getModelInterface

public java.lang.Class getModelInterface()

Specified by:

getModelInterface in interface BioPAXElement

Overrides:

getModelInterface in class physicalEntityParticipantImpl

getSEQUENCE_FEATURE_LIST

public java.util.Set<sequenceFeature> getSEQUENCE_FEATURE_LIST()

Specified by:

getSEQUENCE_FEATURE_LIST in interface sequenceParticipant

addSEQUENCE_FEATURE_LIST

public void addSEQUENCE_FEATURE_LIST(sequenceFeature SEQUENCE_FEATURE)

Specified by:

addSEQUENCE_FEATURE_LIST in interface sequenceParticipant

removeSEQUENCE_FEATURE_LIST

public void removeSEQUENCE_FEATURE_LIST(sequenceFeature SEQUENCE_FEATURE)

Specified by:

removeSEQUENCE_FEATURE_LIST in interface sequenceParticipant

setSEQUENCE_FEATURE_LIST

public void setSEQUENCE_FEATURE_LIST(java.util.Set<sequenceFeature> SEQUENCE_FEATURE_LIST)

Specified by:

setSEQUENCE_FEATURE_LIST in interface sequenceParticipant

isEquivalentState

public boolean isEquivalentState(physicalEntityParticipant pep)

Overrides:

isEquivalentState in class physicalEntityParticipantImpl

stateCode

public int stateCode()

Overrides:

stateCode in class physicalEntityParticipantImpl