org.biopax.paxtools.impl.level2
Class sequenceFeatureImpl

java.lang.Object
  org.biopax.paxtools.impl.level2.bioPAXElementImpl
      org.biopax.paxtools.impl.level2.sequenceFeatureImpl

All Implemented Interfaces:

BioPAXElement, sequenceFeature, utilityClass, XReferrable

public class sequenceFeatureImpl
extends bioPAXElementImpl
implements sequenceFeature

Field Summary

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

sequenceFeatureImpl()

Method Summary

void	addFEATURE_LOCATION(sequenceLocation FEATURE_LOCATION)
void	addSYNONYMS(java.lang.String SYNONYMS)
void	addXREF(xref XREF)
int	equivalenceCode()
java.util.Set<sequenceLocation>	getFEATURE_LOCATION()
openControlledVocabulary	getFEATURE_TYPE()
java.lang.Class	getModelInterface()
java.lang.String	getNAME()
java.lang.String	getSHORT_NAME()
java.util.Set<java.lang.String>	getSYNONYMS()
java.util.Set<xref>	getXREF()
boolean	isEquivalent(BioPAXElement o)
void	removeFEATURE_LOCATION(sequenceLocation FEATURE_LOCATION)
void	removeSYNONYMS(java.lang.String SYNONYMS)
void	removeXREF(xref XREF)
void	setFEATURE_LOCATION(java.util.Set<sequenceLocation> FEATURE_LOCATION)
void	setFEATURE_TYPE(openControlledVocabulary FEATURE_TYPE)
void	setNAME(java.lang.String NAME)
void	setSHORT_NAME(java.lang.String SHORT_NAME)
void	setSYNONYMS(java.util.Set<java.lang.String> SYNONYMS)
void	setXREF(java.util.Set<xref> XREF)

Methods inherited from class org.biopax.paxtools.impl.level2.bioPAXElementImpl

addCOMMENT, equals, getCOMMENT, getRDFId, hashCode, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Constructor Detail

sequenceFeatureImpl

public sequenceFeatureImpl()

Method Detail

equivalenceCode

public int equivalenceCode()

Specified by:

equivalenceCode in interface BioPAXElement

isEquivalent

public boolean isEquivalent(BioPAXElement o)

Specified by:

isEquivalent in interface BioPAXElement

getModelInterface

public java.lang.Class getModelInterface()

Specified by:

getModelInterface in interface BioPAXElement

getXREF

public java.util.Set<xref> getXREF()

Specified by:

getXREF in interface XReferrable

setXREF

public void setXREF(java.util.Set<xref> XREF)

Specified by:

setXREF in interface XReferrable

addXREF

public void addXREF(xref XREF)

Specified by:

addXREF in interface XReferrable

removeXREF

public void removeXREF(xref XREF)

Specified by:

removeXREF in interface XReferrable

getFEATURE_TYPE

public openControlledVocabulary getFEATURE_TYPE()

Specified by:

getFEATURE_TYPE in interface sequenceFeature

setFEATURE_TYPE

public void setFEATURE_TYPE(openControlledVocabulary FEATURE_TYPE)

Specified by:

setFEATURE_TYPE in interface sequenceFeature

getFEATURE_LOCATION

public java.util.Set<sequenceLocation> getFEATURE_LOCATION()

Specified by:

getFEATURE_LOCATION in interface sequenceFeature

setFEATURE_LOCATION

public void setFEATURE_LOCATION(java.util.Set<sequenceLocation> FEATURE_LOCATION)

Specified by:

setFEATURE_LOCATION in interface sequenceFeature

addFEATURE_LOCATION

public void addFEATURE_LOCATION(sequenceLocation FEATURE_LOCATION)

Specified by:

addFEATURE_LOCATION in interface sequenceFeature

removeFEATURE_LOCATION

public void removeFEATURE_LOCATION(sequenceLocation FEATURE_LOCATION)

Specified by:

removeFEATURE_LOCATION in interface sequenceFeature

getNAME

public java.lang.String getNAME()

Specified by:

getNAME in interface sequenceFeature

setNAME

public void setNAME(java.lang.String NAME)

Specified by:

setNAME in interface sequenceFeature

getSYNONYMS

public java.util.Set<java.lang.String> getSYNONYMS()

Specified by:

getSYNONYMS in interface sequenceFeature

setSYNONYMS

public void setSYNONYMS(java.util.Set<java.lang.String> SYNONYMS)

Specified by:

setSYNONYMS in interface sequenceFeature

addSYNONYMS

public void addSYNONYMS(java.lang.String SYNONYMS)

Specified by:

addSYNONYMS in interface sequenceFeature

removeSYNONYMS

public void removeSYNONYMS(java.lang.String SYNONYMS)

Specified by:

removeSYNONYMS in interface sequenceFeature

getSHORT_NAME

public java.lang.String getSHORT_NAME()

Specified by:

getSHORT_NAME in interface sequenceFeature

setSHORT_NAME

public void setSHORT_NAME(java.lang.String SHORT_NAME)

Specified by:

setSHORT_NAME in interface sequenceFeature