org.biopax.paxtools.impl.level2
Class proteinImpl

java.lang.Object
  org.biopax.paxtools.impl.level2.bioPAXElementImpl
      org.biopax.paxtools.impl.level2.entityImpl
          org.biopax.paxtools.impl.level2.physicalEntityImpl
              org.biopax.paxtools.impl.level2.proteinImpl

All Implemented Interfaces:

BioPAXElement, entity, InteractionParticipant, physicalEntity, protein, sequenceEntity, XReferrable

public class proteinImpl
extends physicalEntityImpl
implements protein

Field Summary

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

proteinImpl()

Method Summary

java.lang.Class	getModelInterface()
bioSource	getORGANISM()
java.lang.String	getSEQUENCE()
void	setORGANISM(bioSource ORGANISM) ORGANISM of origin for this sequence entity
void	setSEQUENCE(java.lang.String SEQUENCE)

Methods inherited from class org.biopax.paxtools.impl.level2.physicalEntityImpl

addPHYSICAL_ENTITYof, equivalenceCode, isEquivalent, isPHYSICAL_ENTITYof

Methods inherited from class org.biopax.paxtools.impl.level2.entityImpl

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, addXREF, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, getXREF, isPARTICIPANTSof, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, removeXREF, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS, setXREF

Methods inherited from class org.biopax.paxtools.impl.level2.bioPAXElementImpl

addCOMMENT, equals, getCOMMENT, getRDFId, hashCode, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.sequenceEntity

getORGANISM, getSEQUENCE, setORGANISM, setSEQUENCE

Methods inherited from interface org.biopax.paxtools.model.level2.physicalEntity

isPHYSICAL_ENTITYof

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Constructor Detail

proteinImpl

public proteinImpl()

Method Detail

getModelInterface

public java.lang.Class getModelInterface()

Specified by:

getModelInterface in interface BioPAXElement

Overrides:

getModelInterface in class physicalEntityImpl

getORGANISM

public bioSource getORGANISM()

getSEQUENCE

public java.lang.String getSEQUENCE()

setORGANISM

public void setORGANISM(bioSource ORGANISM)

ORGANISM of origin for this sequence entity

Parameters:

ORGANISM- - set null for cannonical

setSEQUENCE

public void setSEQUENCE(java.lang.String SEQUENCE)