org.biopax.paxtools.impl.level2
Class physicalInteractionImpl

java.lang.Object
  org.biopax.paxtools.impl.level2.bioPAXElementImpl
      org.biopax.paxtools.impl.level2.entityImpl
          org.biopax.paxtools.impl.level2.processImpl
              org.biopax.paxtools.impl.level2.interactionAdapter
                  org.biopax.paxtools.impl.level2.physicalInteractionAdapter
                      org.biopax.paxtools.impl.level2.physicalInteractionImpl

All Implemented Interfaces:

BioPAXElement, entity, interaction, InteractionParticipant, pathwayComponent, physicalInteraction, process, XReferrable

public class physicalInteractionImpl
extends physicalInteractionAdapter

Field Summary

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

physicalInteractionImpl()

Method Summary

void	addPARTICIPANTS(InteractionParticipant aParticipant)
java.lang.Class	getModelInterface()
java.util.Set<InteractionParticipant>	getPARTICIPANTS()
boolean	isEquivalent(BioPAXElement element)
void	removePARTICIPANTS(InteractionParticipant aParticipant)
void	setPARTICIPANTS(java.util.Set<InteractionParticipant> PARTICIPANTS)

Methods inherited from class org.biopax.paxtools.impl.level2.physicalInteractionAdapter

addINTERACTION_TYPE, getINTERACTION_TYPE, removeINTERACTION_TYPE, setINTERACTION_TYPE

Methods inherited from class org.biopax.paxtools.impl.level2.interactionAdapter

compareParticipantSets, equivalenceCode, setParticipantInverse, updatePARTICIPANTS

Methods inherited from class org.biopax.paxtools.impl.level2.processImpl

addCONTROLLEDof, addEVIDENCE, addSTEP_INTERACTIONSOf, getEVIDENCE, isCONTROLLEDOf, isPATHWAY_COMPONENTSof, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from class org.biopax.paxtools.impl.level2.entityImpl

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, addXREF, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, getXREF, isPARTICIPANTSof, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, removeXREF, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS, setXREF

Methods inherited from class org.biopax.paxtools.impl.level2.bioPAXElementImpl

addCOMMENT, equals, getCOMMENT, getRDFId, hashCode, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.process

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.pathwayComponent

isPATHWAY_COMPONENTSof

Constructor Detail

physicalInteractionImpl

public physicalInteractionImpl()

Method Detail

isEquivalent

public boolean isEquivalent(BioPAXElement element)

Specified by:

isEquivalent in interface BioPAXElement

Overrides:

isEquivalent in class interactionAdapter

getModelInterface

public java.lang.Class getModelInterface()

getPARTICIPANTS

public java.util.Set<InteractionParticipant> getPARTICIPANTS()

Specified by:

getPARTICIPANTS in interface interaction

Overrides:

getPARTICIPANTS in class interactionAdapter

setPARTICIPANTS

public void setPARTICIPANTS(java.util.Set<InteractionParticipant> PARTICIPANTS)

Specified by:

setPARTICIPANTS in interface interaction

Overrides:

setPARTICIPANTS in class physicalInteractionAdapter

addPARTICIPANTS

public void addPARTICIPANTS(InteractionParticipant aParticipant)

Specified by:

addPARTICIPANTS in interface interaction

Overrides:

addPARTICIPANTS in class physicalInteractionAdapter

removePARTICIPANTS

public void removePARTICIPANTS(InteractionParticipant aParticipant)

Specified by:

removePARTICIPANTS in interface interaction

Overrides:

removePARTICIPANTS in class physicalInteractionAdapter