org.biopax.paxtools.impl.level2
Class physicalInteractionAdapter

java.lang.Object
  org.biopax.paxtools.impl.level2.bioPAXElementImpl
      org.biopax.paxtools.impl.level2.entityImpl
          org.biopax.paxtools.impl.level2.processImpl
              org.biopax.paxtools.impl.level2.interactionAdapter
                  org.biopax.paxtools.impl.level2.physicalInteractionAdapter

All Implemented Interfaces:

BioPAXElement, entity, interaction, InteractionParticipant, pathwayComponent, physicalInteraction, process, XReferrable

Direct Known Subclasses:

controlImpl, conversionImpl, physicalInteractionImpl

public abstract class physicalInteractionAdapter
extends interactionAdapter
implements physicalInteraction

Field Summary

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

physicalInteractionAdapter()

Method Summary

void	addINTERACTION_TYPE(openControlledVocabulary INTERACTION_TYPE)
void	addPARTICIPANTS(InteractionParticipant aParticipant)
java.util.Set<openControlledVocabulary>	getINTERACTION_TYPE()
void	removeINTERACTION_TYPE(openControlledVocabulary INTERACTION_TYPE)
void	removePARTICIPANTS(InteractionParticipant aParticipant)
void	setINTERACTION_TYPE(java.util.Set<openControlledVocabulary> INTERACTION_TYPE)
void	setPARTICIPANTS(java.util.Set<InteractionParticipant> PARTICIPANTS)

Methods inherited from class org.biopax.paxtools.impl.level2.interactionAdapter

compareParticipantSets, equivalenceCode, getPARTICIPANTS, isEquivalent, setParticipantInverse, updatePARTICIPANTS

Methods inherited from class org.biopax.paxtools.impl.level2.processImpl

addCONTROLLEDof, addEVIDENCE, addSTEP_INTERACTIONSOf, getEVIDENCE, isCONTROLLEDOf, isPATHWAY_COMPONENTSof, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from class org.biopax.paxtools.impl.level2.entityImpl

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, addXREF, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, getXREF, isPARTICIPANTSof, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, removeXREF, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS, setXREF

Methods inherited from class org.biopax.paxtools.impl.level2.bioPAXElementImpl

addCOMMENT, equals, getCOMMENT, getRDFId, hashCode, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.interaction

getPARTICIPANTS

Methods inherited from interface org.biopax.paxtools.model.level2.process

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getModelInterface, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.pathwayComponent

isPATHWAY_COMPONENTSof

Constructor Detail

physicalInteractionAdapter

public physicalInteractionAdapter()

Method Detail

addINTERACTION_TYPE

public void addINTERACTION_TYPE(openControlledVocabulary INTERACTION_TYPE)

Specified by:

addINTERACTION_TYPE in interface physicalInteraction

getINTERACTION_TYPE

public java.util.Set<openControlledVocabulary> getINTERACTION_TYPE()

Specified by:

getINTERACTION_TYPE in interface physicalInteraction

removeINTERACTION_TYPE

public void removeINTERACTION_TYPE(openControlledVocabulary INTERACTION_TYPE)

Specified by:

removeINTERACTION_TYPE in interface physicalInteraction

setINTERACTION_TYPE

public void setINTERACTION_TYPE(java.util.Set<openControlledVocabulary> INTERACTION_TYPE)

Specified by:

setINTERACTION_TYPE in interface physicalInteraction

addPARTICIPANTS

public void addPARTICIPANTS(InteractionParticipant aParticipant)

Specified by:

addPARTICIPANTS in interface interaction

removePARTICIPANTS

public void removePARTICIPANTS(InteractionParticipant aParticipant)

Specified by:

removePARTICIPANTS in interface interaction

setPARTICIPANTS

public void setPARTICIPANTS(java.util.Set<InteractionParticipant> PARTICIPANTS)

Specified by:

setPARTICIPANTS in interface interaction