org.biopax.paxtools.impl.level2
Class physicalEntityParticipantImpl

java.lang.Object
  org.biopax.paxtools.impl.level2.bioPAXElementImpl
      org.biopax.paxtools.impl.level2.physicalEntityParticipantImpl

All Implemented Interfaces:

BioPAXElement, InteractionParticipant, physicalEntityParticipant, utilityClass

Direct Known Subclasses:

sequenceParticipantImpl

public class physicalEntityParticipantImpl
extends bioPAXElementImpl
implements physicalEntityParticipant

Field Summary

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

physicalEntityParticipantImpl()

Method Summary

int	equivalenceCode()
openControlledVocabulary	getCELLULAR_LOCATION()
java.lang.Class	getModelInterface()
physicalEntity	getPHYSICAL_ENTITY()
double	getSTOICHIOMETRIC_COEFFICIENT()
complex	isCOMPONENTof()
boolean	isEquivalent(BioPAXElement element)
boolean	isEquivalentState(physicalEntityParticipant that)
java.util.Set<interaction>	isPARTICIPANTSof() This method returns the interaction that this entity/pep takes part in.
void	setCELLULAR_LOCATION(openControlledVocabulary CELLULAR_LOCATION)
void	setCOMPONENTSof(complex aComplex)
void	setPHYSICAL_ENTITY(physicalEntity PHYSICAL_ENTITY)
void	setSTOICHIOMETRIC_COEFFICIENT(double STOICHIOMETRIC_COEFFICIENT)
int	stateCode()

Methods inherited from class org.biopax.paxtools.impl.level2.bioPAXElementImpl

addCOMMENT, equals, getCOMMENT, getRDFId, hashCode, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Constructor Detail

physicalEntityParticipantImpl

public physicalEntityParticipantImpl()

Method Detail

isEquivalent

public boolean isEquivalent(BioPAXElement element)

Specified by:

isEquivalent in interface BioPAXElement

isEquivalentState

public boolean isEquivalentState(physicalEntityParticipant that)

stateCode

public int stateCode()

equivalenceCode

public int equivalenceCode()

Specified by:

equivalenceCode in interface BioPAXElement

getModelInterface

public java.lang.Class getModelInterface()

Specified by:

getModelInterface in interface BioPAXElement

isPARTICIPANTSof

public java.util.Set<interaction> isPARTICIPANTSof()

Description copied from interface: InteractionParticipant

This method returns the interaction that this entity/pep takes part in. Contents of this set should not be modified.

Specified by:

isPARTICIPANTSof in interface InteractionParticipant

Returns:

a set of interactions that

getCELLULAR_LOCATION

public openControlledVocabulary getCELLULAR_LOCATION()

Specified by:

getCELLULAR_LOCATION in interface physicalEntityParticipant

setCELLULAR_LOCATION

public void setCELLULAR_LOCATION(openControlledVocabulary CELLULAR_LOCATION)

Specified by:

setCELLULAR_LOCATION in interface physicalEntityParticipant

getSTOICHIOMETRIC_COEFFICIENT

public double getSTOICHIOMETRIC_COEFFICIENT()

Specified by:

getSTOICHIOMETRIC_COEFFICIENT in interface physicalEntityParticipant

setSTOICHIOMETRIC_COEFFICIENT

public void setSTOICHIOMETRIC_COEFFICIENT(double STOICHIOMETRIC_COEFFICIENT)

Specified by:

setSTOICHIOMETRIC_COEFFICIENT in interface physicalEntityParticipant

getPHYSICAL_ENTITY

public physicalEntity getPHYSICAL_ENTITY()

Specified by:

getPHYSICAL_ENTITY in interface physicalEntityParticipant

setPHYSICAL_ENTITY

public void setPHYSICAL_ENTITY(physicalEntity PHYSICAL_ENTITY)

Specified by:

setPHYSICAL_ENTITY in interface physicalEntityParticipant

isCOMPONENTof

public complex isCOMPONENTof()

Specified by:

isCOMPONENTof in interface physicalEntityParticipant

setCOMPONENTSof

public void setCOMPONENTSof(complex aComplex)

Specified by:

setCOMPONENTSof in interface physicalEntityParticipant