org.biopax.paxtools.impl.level2
Class physicalEntityImpl

java.lang.Object
  org.biopax.paxtools.impl.level2.bioPAXElementImpl
      org.biopax.paxtools.impl.level2.entityImpl
          org.biopax.paxtools.impl.level2.physicalEntityImpl

All Implemented Interfaces:

BioPAXElement, entity, InteractionParticipant, physicalEntity, XReferrable

Direct Known Subclasses:

complexImpl, dnaImpl, proteinImpl, rnaImpl, smallMoleculeImpl

public class physicalEntityImpl
extends entityImpl
implements physicalEntity

Field Summary

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

physicalEntityImpl()

Method Summary

void	addPHYSICAL_ENTITYof(physicalEntityParticipant pep)
int	equivalenceCode()
java.lang.Class	getModelInterface()
boolean	isEquivalent(BioPAXElement element)
java.util.Set<physicalEntityParticipant>	isPHYSICAL_ENTITYof()

Methods inherited from class org.biopax.paxtools.impl.level2.entityImpl

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, addXREF, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, getXREF, isPARTICIPANTSof, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, removeXREF, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS, setXREF

Methods inherited from class org.biopax.paxtools.impl.level2.bioPAXElementImpl

addCOMMENT, equals, getCOMMENT, getRDFId, hashCode, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Constructor Detail

physicalEntityImpl

public physicalEntityImpl()

Method Detail

isEquivalent

public boolean isEquivalent(BioPAXElement element)

Specified by:

isEquivalent in interface BioPAXElement

equivalenceCode

public int equivalenceCode()

Specified by:

equivalenceCode in interface BioPAXElement

getModelInterface

public java.lang.Class getModelInterface()

Specified by:

getModelInterface in interface BioPAXElement

isPHYSICAL_ENTITYof

public java.util.Set<physicalEntityParticipant> isPHYSICAL_ENTITYof()

Specified by:

isPHYSICAL_ENTITYof in interface physicalEntity

addPHYSICAL_ENTITYof

public void addPHYSICAL_ENTITYof(physicalEntityParticipant pep)