org.biopax.paxtools.impl.level2
Class pathwayImpl

java.lang.Object
  org.biopax.paxtools.impl.level2.bioPAXElementImpl
      org.biopax.paxtools.impl.level2.entityImpl
          org.biopax.paxtools.impl.level2.processImpl
              org.biopax.paxtools.impl.level2.pathwayImpl

All Implemented Interfaces:

BioPAXElement, entity, InteractionParticipant, pathway, pathwayComponent, process, XReferrable

public class pathwayImpl
extends processImpl
implements pathway

Field Summary

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

pathwayImpl()

Method Summary

void	addPATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT)
int	equivalenceCode()
java.lang.Class	getModelInterface()
bioSource	getORGANISM()
java.util.Set<pathwayComponent>	getPATHWAY_COMPONENTS()
boolean	isEquivalent(BioPAXElement element)
void	removePATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT)
void	setORGANISM(bioSource ORGANISM)
void	setPATHWAY_COMPONENTS(java.util.Set<pathwayComponent> PATHWAY_COMPONENTS)

Methods inherited from class org.biopax.paxtools.impl.level2.processImpl

addCONTROLLEDof, addEVIDENCE, addSTEP_INTERACTIONSOf, getEVIDENCE, isCONTROLLEDOf, isPATHWAY_COMPONENTSof, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from class org.biopax.paxtools.impl.level2.entityImpl

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, addXREF, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, getXREF, isPARTICIPANTSof, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, removeXREF, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS, setXREF

Methods inherited from class org.biopax.paxtools.impl.level2.bioPAXElementImpl

addCOMMENT, equals, getCOMMENT, getRDFId, hashCode, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.process

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.pathwayComponent

isPATHWAY_COMPONENTSof

Constructor Detail

pathwayImpl

public pathwayImpl()

Method Detail

isEquivalent

public boolean isEquivalent(BioPAXElement element)

Specified by:

isEquivalent in interface BioPAXElement

equivalenceCode

public int equivalenceCode()

Specified by:

equivalenceCode in interface BioPAXElement

getModelInterface

public java.lang.Class getModelInterface()

Specified by:

getModelInterface in interface BioPAXElement

getPATHWAY_COMPONENTS

public java.util.Set<pathwayComponent> getPATHWAY_COMPONENTS()

Specified by:

getPATHWAY_COMPONENTS in interface pathway

setPATHWAY_COMPONENTS

public void setPATHWAY_COMPONENTS(java.util.Set<pathwayComponent> PATHWAY_COMPONENTS)

Specified by:

setPATHWAY_COMPONENTS in interface pathway

addPATHWAY_COMPONENTS

public void addPATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT)

Specified by:

addPATHWAY_COMPONENTS in interface pathway

removePATHWAY_COMPONENTS

public void removePATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT)

Specified by:

removePATHWAY_COMPONENTS in interface pathway

getORGANISM

public bioSource getORGANISM()

Specified by:

getORGANISM in interface pathway

setORGANISM

public void setORGANISM(bioSource ORGANISM)

Specified by:

setORGANISM in interface pathway