org.biopax.paxtools.impl.level2
Class openControlledVocabularyImpl

java.lang.Object
  org.biopax.paxtools.impl.level2.bioPAXElementImpl
      org.biopax.paxtools.impl.level2.openControlledVocabularyImpl

All Implemented Interfaces:

BioPAXElement, externalReferenceUtilityClass, openControlledVocabulary, utilityClass, XReferrable

public class openControlledVocabularyImpl
extends bioPAXElementImpl
implements openControlledVocabulary

Field Summary

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

openControlledVocabularyImpl()

Method Summary

void	addTERM(java.lang.String TERM)
void	addXREF(xref XREF)
int	equivalenceCode()
java.lang.Class	getModelInterface()
java.util.Set<java.lang.String>	getTERM()
java.util.Set<xref>	getXREF()
boolean	isEquivalent(BioPAXElement o) Not possible to implement - needs to be done manually TODO: think about this.
void	removeTERM(java.lang.String TERM)
void	removeXREF(xref XREF)
void	setTERM(java.util.Set<java.lang.String> TERM)
void	setXREF(java.util.Set<xref> XREF)

Methods inherited from class org.biopax.paxtools.impl.level2.bioPAXElementImpl

addCOMMENT, equals, getCOMMENT, getRDFId, hashCode, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Constructor Detail

openControlledVocabularyImpl

public openControlledVocabularyImpl()

Method Detail

isEquivalent

public boolean isEquivalent(BioPAXElement o)

Not possible to implement - needs to be done manually TODO: think about this.

Specified by:

isEquivalent in interface BioPAXElement

Parameters:

o -

Returns:

false

equivalenceCode

public int equivalenceCode()

Specified by:

equivalenceCode in interface BioPAXElement

getModelInterface

public java.lang.Class getModelInterface()

Specified by:

getModelInterface in interface BioPAXElement

getXREF

public java.util.Set<xref> getXREF()

Specified by:

getXREF in interface XReferrable

setXREF

public void setXREF(java.util.Set<xref> XREF)

Specified by:

setXREF in interface XReferrable

addXREF

public void addXREF(xref XREF)

Specified by:

addXREF in interface XReferrable

removeXREF

public void removeXREF(xref XREF)

Specified by:

removeXREF in interface XReferrable

getTERM

public java.util.Set<java.lang.String> getTERM()

Specified by:

getTERM in interface openControlledVocabulary

setTERM

public void setTERM(java.util.Set<java.lang.String> TERM)

Specified by:

setTERM in interface openControlledVocabulary

addTERM

public void addTERM(java.lang.String TERM)

Specified by:

addTERM in interface openControlledVocabulary

removeTERM

public void removeTERM(java.lang.String TERM)

Specified by:

removeTERM in interface openControlledVocabulary