org.biopax.paxtools.impl.level2
Class conversionImpl

java.lang.Object
  org.biopax.paxtools.impl.level2.bioPAXElementImpl
      org.biopax.paxtools.impl.level2.entityImpl
          org.biopax.paxtools.impl.level2.processImpl
              org.biopax.paxtools.impl.level2.interactionAdapter
                  org.biopax.paxtools.impl.level2.physicalInteractionAdapter
                      org.biopax.paxtools.impl.level2.conversionImpl

All Implemented Interfaces:

BioPAXElement, conversion, entity, interaction, InteractionParticipant, pathwayComponent, physicalInteraction, process, XReferrable

Direct Known Subclasses:

biochemicalReactionImpl, complexAssemblyImpl, transportImpl

public class conversionImpl
extends physicalInteractionAdapter
implements conversion

Field Summary

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

conversionImpl()

Method Summary

void	addLEFT(physicalEntityParticipant LEFT)
void	addPARTICIPANTS(InteractionParticipant aParticipant)
void	addRIGHT(physicalEntityParticipant RIGHT)
int	equivalenceCode()
java.util.Set<physicalEntityParticipant>	getLEFT()
java.lang.Class	getModelInterface()
java.util.Set<physicalEntityParticipant>	getRIGHT()
SpontaneousType	getSPONTANEOUS()
boolean	isEquivalent(BioPAXElement element)
void	removeLEFT(physicalEntityParticipant LEFT)
void	removePARTICIPANTS(InteractionParticipant aParticipant)
void	removeRIGHT(physicalEntityParticipant RIGHT)
void	setLEFT(java.util.Set<physicalEntityParticipant> LEFT)
void	setPARTICIPANTS(java.util.Set<InteractionParticipant> PARTICIPANTS)
void	setRIGHT(java.util.Set<physicalEntityParticipant> RIGHT)
void	setSPONTANEOUS(SpontaneousType SpontanousType)

Methods inherited from class org.biopax.paxtools.impl.level2.physicalInteractionAdapter

addINTERACTION_TYPE, getINTERACTION_TYPE, removeINTERACTION_TYPE, setINTERACTION_TYPE

Methods inherited from class org.biopax.paxtools.impl.level2.interactionAdapter

compareParticipantSets, getPARTICIPANTS, setParticipantInverse, updatePARTICIPANTS

Methods inherited from class org.biopax.paxtools.impl.level2.processImpl

addCONTROLLEDof, addEVIDENCE, addSTEP_INTERACTIONSOf, getEVIDENCE, isCONTROLLEDOf, isPATHWAY_COMPONENTSof, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from class org.biopax.paxtools.impl.level2.entityImpl

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, addXREF, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, getXREF, isPARTICIPANTSof, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, removeXREF, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS, setXREF

Methods inherited from class org.biopax.paxtools.impl.level2.bioPAXElementImpl

addCOMMENT, equals, getCOMMENT, getRDFId, hashCode, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.physicalInteraction

addINTERACTION_TYPE, getINTERACTION_TYPE, removeINTERACTION_TYPE, setINTERACTION_TYPE

Methods inherited from interface org.biopax.paxtools.model.level2.interaction

getPARTICIPANTS

Methods inherited from interface org.biopax.paxtools.model.level2.process

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.pathwayComponent

isPATHWAY_COMPONENTSof

Constructor Detail

conversionImpl

public conversionImpl()

Method Detail

isEquivalent

public boolean isEquivalent(BioPAXElement element)

Specified by:

isEquivalent in interface BioPAXElement

Overrides:

isEquivalent in class interactionAdapter

equivalenceCode

public int equivalenceCode()

Specified by:

equivalenceCode in interface BioPAXElement

Overrides:

equivalenceCode in class interactionAdapter

getModelInterface

public java.lang.Class getModelInterface()

Specified by:

getModelInterface in interface BioPAXElement

getRIGHT

public java.util.Set<physicalEntityParticipant> getRIGHT()

Specified by:

getRIGHT in interface conversion

setRIGHT

public void setRIGHT(java.util.Set<physicalEntityParticipant> RIGHT)

Specified by:

setRIGHT in interface conversion

addRIGHT

public void addRIGHT(physicalEntityParticipant RIGHT)

Specified by:

addRIGHT in interface conversion

removeRIGHT

public void removeRIGHT(physicalEntityParticipant RIGHT)

Specified by:

removeRIGHT in interface conversion

getLEFT

public java.util.Set<physicalEntityParticipant> getLEFT()

Specified by:

getLEFT in interface conversion

setLEFT

public void setLEFT(java.util.Set<physicalEntityParticipant> LEFT)

Specified by:

setLEFT in interface conversion

addLEFT

public void addLEFT(physicalEntityParticipant LEFT)

Specified by:

addLEFT in interface conversion

removeLEFT

public void removeLEFT(physicalEntityParticipant LEFT)

Specified by:

removeLEFT in interface conversion

getSPONTANEOUS

public SpontaneousType getSPONTANEOUS()

Specified by:

getSPONTANEOUS in interface conversion

setSPONTANEOUS

public void setSPONTANEOUS(SpontaneousType SpontanousType)

Specified by:

setSPONTANEOUS in interface conversion

setPARTICIPANTS

public void setPARTICIPANTS(java.util.Set<InteractionParticipant> PARTICIPANTS)

Specified by:

setPARTICIPANTS in interface interaction

Overrides:

setPARTICIPANTS in class physicalInteractionAdapter

addPARTICIPANTS

public void addPARTICIPANTS(InteractionParticipant aParticipant)

Specified by:

addPARTICIPANTS in interface interaction

Overrides:

addPARTICIPANTS in class physicalInteractionAdapter

removePARTICIPANTS

public void removePARTICIPANTS(InteractionParticipant aParticipant)

Specified by:

removePARTICIPANTS in interface interaction

Overrides:

removePARTICIPANTS in class physicalInteractionAdapter