org.biopax.paxtools.impl.level2
Class controlImpl

java.lang.Object
  org.biopax.paxtools.impl.level2.bioPAXElementImpl
      org.biopax.paxtools.impl.level2.entityImpl
          org.biopax.paxtools.impl.level2.processImpl
              org.biopax.paxtools.impl.level2.interactionAdapter
                  org.biopax.paxtools.impl.level2.physicalInteractionAdapter
                      org.biopax.paxtools.impl.level2.controlImpl

All Implemented Interfaces:

BioPAXElement, control, entity, interaction, InteractionParticipant, pathwayComponent, physicalInteraction, process, XReferrable

Direct Known Subclasses:

catalysisImpl, modulationImpl

public class controlImpl
extends physicalInteractionAdapter
implements control

Field Summary

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

controlImpl()

Method Summary

void	addCONTROLLED(process CONTROLLED)
void	addCONTROLLER(physicalEntityParticipant CONTROLLER)
void	addPARTICIPANTS(InteractionParticipant aParticipant)
protected boolean	checkCONTROLLED(process controlled)
ControlType	getCONTROL_TYPE()
java.util.Set<process>	getCONTROLLED()
java.util.Set<physicalEntityParticipant>	getCONTROLLER()
java.lang.Class	getModelInterface()
boolean	isEquivalent(BioPAXElement element)
void	removeCONTROLLED(process CONTROLLED)
void	removeCONTROLLER(physicalEntityParticipant CONTROLLER)
void	removePARTICIPANTS(InteractionParticipant aParticipant)
void	setCONTROL_TYPE(ControlType CONTROL_TYPE)
void	setCONTROLLED(java.util.Set<process> CONTROLLED)
void	setCONTROLLER(java.util.Set<physicalEntityParticipant> CONTROLLER)
void	setPARTICIPANTS(java.util.Set<InteractionParticipant> PARTICIPANTS)

Methods inherited from class org.biopax.paxtools.impl.level2.physicalInteractionAdapter

addINTERACTION_TYPE, getINTERACTION_TYPE, removeINTERACTION_TYPE, setINTERACTION_TYPE

Methods inherited from class org.biopax.paxtools.impl.level2.interactionAdapter

compareParticipantSets, equivalenceCode, getPARTICIPANTS, setParticipantInverse, updatePARTICIPANTS

Methods inherited from class org.biopax.paxtools.impl.level2.processImpl

addCONTROLLEDof, addEVIDENCE, addSTEP_INTERACTIONSOf, getEVIDENCE, isCONTROLLEDOf, isPATHWAY_COMPONENTSof, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from class org.biopax.paxtools.impl.level2.entityImpl

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, addXREF, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, getXREF, isPARTICIPANTSof, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, removeXREF, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS, setXREF

Methods inherited from class org.biopax.paxtools.impl.level2.bioPAXElementImpl

addCOMMENT, equals, getCOMMENT, getRDFId, hashCode, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.physicalInteraction

addINTERACTION_TYPE, getINTERACTION_TYPE, removeINTERACTION_TYPE, setINTERACTION_TYPE

Methods inherited from interface org.biopax.paxtools.model.level2.interaction

getPARTICIPANTS

Methods inherited from interface org.biopax.paxtools.model.level2.process

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getRDFId, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.pathwayComponent

isPATHWAY_COMPONENTSof

Constructor Detail

controlImpl

public controlImpl()

Method Detail

isEquivalent

public boolean isEquivalent(BioPAXElement element)

Specified by:

isEquivalent in interface BioPAXElement

Overrides:

isEquivalent in class interactionAdapter

getModelInterface

public java.lang.Class getModelInterface()

Specified by:

getModelInterface in interface BioPAXElement

getCONTROL_TYPE

public ControlType getCONTROL_TYPE()

Specified by:

getCONTROL_TYPE in interface control

setCONTROL_TYPE

public void setCONTROL_TYPE(ControlType CONTROL_TYPE)

Specified by:

setCONTROL_TYPE in interface control

getCONTROLLED

public java.util.Set<process> getCONTROLLED()

Specified by:

getCONTROLLED in interface control

setCONTROLLED

public void setCONTROLLED(java.util.Set<process> CONTROLLED)

Specified by:

setCONTROLLED in interface control

addCONTROLLED

public void addCONTROLLED(process CONTROLLED)

Specified by:

addCONTROLLED in interface control

removeCONTROLLED

public void removeCONTROLLED(process CONTROLLED)

Specified by:

removeCONTROLLED in interface control

getCONTROLLER

public java.util.Set<physicalEntityParticipant> getCONTROLLER()

Specified by:

getCONTROLLER in interface control

setCONTROLLER

public void setCONTROLLER(java.util.Set<physicalEntityParticipant> CONTROLLER)

Specified by:

setCONTROLLER in interface control

addCONTROLLER

public void addCONTROLLER(physicalEntityParticipant CONTROLLER)

Specified by:

addCONTROLLER in interface control

removeCONTROLLER

public void removeCONTROLLER(physicalEntityParticipant CONTROLLER)

Specified by:

removeCONTROLLER in interface control

setPARTICIPANTS

public void setPARTICIPANTS(java.util.Set<InteractionParticipant> PARTICIPANTS)

Specified by:

setPARTICIPANTS in interface interaction

Overrides:

setPARTICIPANTS in class physicalInteractionAdapter

addPARTICIPANTS

public void addPARTICIPANTS(InteractionParticipant aParticipant)

Specified by:

addPARTICIPANTS in interface interaction

Overrides:

addPARTICIPANTS in class physicalInteractionAdapter

removePARTICIPANTS

public void removePARTICIPANTS(InteractionParticipant aParticipant)

Specified by:

removePARTICIPANTS in interface interaction

Overrides:

removePARTICIPANTS in class physicalInteractionAdapter

checkCONTROLLED

protected boolean checkCONTROLLED(process controlled)