org.biopax.paxtools.impl.level2
Class complexImpl

java.lang.Object
  org.biopax.paxtools.impl.level2.bioPAXElementImpl
      org.biopax.paxtools.impl.level2.entityImpl
          org.biopax.paxtools.impl.level2.physicalEntityImpl
              org.biopax.paxtools.impl.level2.complexImpl

All Implemented Interfaces:

BioPAXElement, complex, entity, InteractionParticipant, physicalEntity, XReferrable

public class complexImpl
extends physicalEntityImpl
implements complex

Field Summary

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

complexImpl()

Method Summary

void	addCOMPONENTS(physicalEntityParticipant COMPONENT)
java.util.Set<physicalEntityParticipant>	getCOMPONENTS()
java.lang.Class	getModelInterface()
bioSource	getORGANISM()
void	removeCOMPONENTS(physicalEntityParticipant COMPONENT)
void	setCOMPONENTS(java.util.Set<physicalEntityParticipant> COMPONENTS)
void	setORGANISM(bioSource ORGANISM) ORGANISM of origin for this sequence entity

Methods inherited from class org.biopax.paxtools.impl.level2.physicalEntityImpl

addPHYSICAL_ENTITYof, equivalenceCode, isEquivalent, isPHYSICAL_ENTITYof

Methods inherited from class org.biopax.paxtools.impl.level2.entityImpl

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, addXREF, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, getXREF, isPARTICIPANTSof, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, removeXREF, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS, setXREF

Methods inherited from class org.biopax.paxtools.impl.level2.bioPAXElementImpl

addCOMMENT, equals, getCOMMENT, getRDFId, hashCode, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.physicalEntity

isPHYSICAL_ENTITYof

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Constructor Detail

complexImpl

public complexImpl()

Method Detail

getModelInterface

public java.lang.Class getModelInterface()

Specified by:

getModelInterface in interface BioPAXElement

Overrides:

getModelInterface in class physicalEntityImpl

getCOMPONENTS

public java.util.Set<physicalEntityParticipant> getCOMPONENTS()

Specified by:

getCOMPONENTS in interface complex

addCOMPONENTS

public void addCOMPONENTS(physicalEntityParticipant COMPONENT)

Specified by:

addCOMPONENTS in interface complex

removeCOMPONENTS

public void removeCOMPONENTS(physicalEntityParticipant COMPONENT)

Specified by:

removeCOMPONENTS in interface complex

setCOMPONENTS

public void setCOMPONENTS(java.util.Set<physicalEntityParticipant> COMPONENTS)

Specified by:

setCOMPONENTS in interface complex

getORGANISM

public bioSource getORGANISM()

Specified by:

getORGANISM in interface complex

setORGANISM

public void setORGANISM(bioSource ORGANISM)

ORGANISM of origin for this sequence entity

Specified by:

setORGANISM in interface complex

Parameters:

ORGANISM- - set null for cannonical