org.biopax.paxtools.impl.level2
Class catalysisImpl

java.lang.Object
  org.biopax.paxtools.impl.level2.bioPAXElementImpl
      org.biopax.paxtools.impl.level2.entityImpl
          org.biopax.paxtools.impl.level2.processImpl
              org.biopax.paxtools.impl.level2.interactionAdapter
                  org.biopax.paxtools.impl.level2.physicalInteractionAdapter
                      org.biopax.paxtools.impl.level2.controlImpl
                          org.biopax.paxtools.impl.level2.catalysisImpl

All Implemented Interfaces:

BioPAXElement, catalysis, control, entity, interaction, InteractionParticipant, pathwayComponent, physicalInteraction, process, XReferrable

public class catalysisImpl
extends controlImpl
implements catalysis

Field Summary

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Fields inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

catalysisImpl()

Method Summary

void	addCOFACTOR(physicalEntityParticipant COFACTOR)
protected boolean	checkCONTROLLED(process controlled)
java.util.Set<physicalEntityParticipant>	getCOFACTOR()
Direction	getDIRECTION()
java.lang.Class	getModelInterface()
void	removeCOFACTOR(physicalEntityParticipant COFACTOR)
void	setCOFACTOR(java.util.Set<physicalEntityParticipant> COFACTOR)
void	setDIRECTION(Direction DIRECTION)

Methods inherited from class org.biopax.paxtools.impl.level2.controlImpl

addCONTROLLED, addCONTROLLER, addPARTICIPANTS, getCONTROL_TYPE, getCONTROLLED, getCONTROLLER, isEquivalent, removeCONTROLLED, removeCONTROLLER, removePARTICIPANTS, setCONTROL_TYPE, setCONTROLLED, setCONTROLLER, setPARTICIPANTS

Methods inherited from class org.biopax.paxtools.impl.level2.physicalInteractionAdapter

addINTERACTION_TYPE, getINTERACTION_TYPE, removeINTERACTION_TYPE, setINTERACTION_TYPE

Methods inherited from class org.biopax.paxtools.impl.level2.interactionAdapter

compareParticipantSets, equivalenceCode, getPARTICIPANTS, setParticipantInverse, updatePARTICIPANTS

Methods inherited from class org.biopax.paxtools.impl.level2.processImpl

addCONTROLLEDof, addEVIDENCE, addSTEP_INTERACTIONSOf, getEVIDENCE, isCONTROLLEDOf, isPATHWAY_COMPONENTSof, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from class org.biopax.paxtools.impl.level2.entityImpl

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, addXREF, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, getXREF, isPARTICIPANTSof, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, removeXREF, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS, setXREF

Methods inherited from class org.biopax.paxtools.impl.level2.bioPAXElementImpl

addCOMMENT, equals, getCOMMENT, getRDFId, hashCode, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level2.control

addCONTROLLED, addCONTROLLER, getCONTROL_TYPE, getCONTROLLED, getCONTROLLER, removeCONTROLLED, removeCONTROLLER, setCONTROL_TYPE, setCONTROLLED, setCONTROLLER

Methods inherited from interface org.biopax.paxtools.model.level2.physicalInteraction

addINTERACTION_TYPE, getINTERACTION_TYPE, removeINTERACTION_TYPE, setINTERACTION_TYPE

Methods inherited from interface org.biopax.paxtools.model.level2.interaction

addPARTICIPANTS, getPARTICIPANTS, removePARTICIPANTS, setPARTICIPANTS

Methods inherited from interface org.biopax.paxtools.model.level2.process

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.BioPAXElement

addCOMMENT, equivalenceCode, getCOMMENT, getRDFId, isEquivalent, removeCOMMENT, setCOMMENT, setRDFId

Methods inherited from interface org.biopax.paxtools.model.level2.pathwayComponent

isPATHWAY_COMPONENTSof

Constructor Detail

catalysisImpl

public catalysisImpl()

Method Detail

getModelInterface

public java.lang.Class getModelInterface()

Specified by:

getModelInterface in interface BioPAXElement

Overrides:

getModelInterface in class controlImpl

getDIRECTION

public Direction getDIRECTION()

Specified by:

getDIRECTION in interface catalysis

setDIRECTION

public void setDIRECTION(Direction DIRECTION)

Specified by:

setDIRECTION in interface catalysis

getCOFACTOR

public java.util.Set<physicalEntityParticipant> getCOFACTOR()

Specified by:

getCOFACTOR in interface catalysis

setCOFACTOR

public void setCOFACTOR(java.util.Set<physicalEntityParticipant> COFACTOR)

Specified by:

setCOFACTOR in interface catalysis

addCOFACTOR

public void addCOFACTOR(physicalEntityParticipant COFACTOR)

Specified by:

addCOFACTOR in interface catalysis

removeCOFACTOR

public void removeCOFACTOR(physicalEntityParticipant COFACTOR)

Specified by:

removeCOFACTOR in interface catalysis

checkCONTROLLED

protected boolean checkCONTROLLED(process controlled)

Overrides:

checkCONTROLLED in class controlImpl