org.biopax.paxtools.impl.level2
Class BioPAXFactoryImpl

java.lang.Object
  org.biopax.paxtools.impl.level2.BioPAXFactoryImpl

All Implemented Interfaces:

BioPAXFactory

public class BioPAXFactoryImpl
extends java.lang.Object
implements BioPAXFactory

User: root Date: Apr 26, 2006 Time: 3:06:08 PM_DOT

Constructor Summary

BioPAXFactoryImpl()

Method Summary

biochemicalReaction	createBiochemicalReaction()
bioSource	createBioSource()
catalysis	createCatalysis()
chemicalStructure	createChemicalStructure()
complex	createComplex()
complexAssembly	createComplexAssembly()
confidence	createConfidence()
control	createControl()
conversion	createConversion()
dataSource	createDataSource()
deltaGprimeO	createDeltaGprimeO()
dna	createDna()
evidence	createEvidence()
experimentalForm	createExperimentalForm()
interaction	createInteraction()
kPrime	createKPrime()
Model	createModel()
modulation	createModulation()
openControlledVocabulary	createOpenControlledVocabulary()
pathway	createPathway()
pathwayStep	createPathwayStep()
physicalEntity	createPhysicalEntity()
physicalEntityParticipant	createPhysicalEntityParticipant()
physicalInteraction	createPhysicalInteraction()
protein	createProtein()
publicationXref	createPublicationXref()
relationshipXref	createRelationshipXref()
rna	createRna()
sequenceFeature	createSequenceFeature()
sequenceInterval	createSequenceInterval()
sequenceParticipant	createSequenceParticipant()
sequenceSite	createSequenceSite()
smallMolecule	createSmallMolecule()
transport	createTransport()
transportWithBiochemicalReaction	createTransportWithBiochemicalReaction()
unificationXref	createUnificationXref()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BioPAXFactoryImpl

public BioPAXFactoryImpl()

Method Detail

createBioSource

public bioSource createBioSource()

Specified by:

createBioSource in interface BioPAXFactory

createBiochemicalReaction

public biochemicalReaction createBiochemicalReaction()

Specified by:

createBiochemicalReaction in interface BioPAXFactory

createCatalysis

public catalysis createCatalysis()

Specified by:

createCatalysis in interface BioPAXFactory

createChemicalStructure

public chemicalStructure createChemicalStructure()

Specified by:

createChemicalStructure in interface BioPAXFactory

createComplex

public complex createComplex()

Specified by:

createComplex in interface BioPAXFactory

createComplexAssembly

public complexAssembly createComplexAssembly()

Specified by:

createComplexAssembly in interface BioPAXFactory

createInteraction

public interaction createInteraction()

Specified by:

createInteraction in interface BioPAXFactory

createPhysicalInteraction

public physicalInteraction createPhysicalInteraction()

Specified by:

createPhysicalInteraction in interface BioPAXFactory

createConfidence

public confidence createConfidence()

Specified by:

createConfidence in interface BioPAXFactory

createControl

public control createControl()

Specified by:

createControl in interface BioPAXFactory

createConversion

public conversion createConversion()

Specified by:

createConversion in interface BioPAXFactory

createDataSource

public dataSource createDataSource()

Specified by:

createDataSource in interface BioPAXFactory

createDeltaGprimeO

public deltaGprimeO createDeltaGprimeO()

Specified by:

createDeltaGprimeO in interface BioPAXFactory

createDna

public dna createDna()

Specified by:

createDna in interface BioPAXFactory

createEvidence

public evidence createEvidence()

Specified by:

createEvidence in interface BioPAXFactory

createExperimentalForm

public experimentalForm createExperimentalForm()

Specified by:

createExperimentalForm in interface BioPAXFactory

createKPrime

public kPrime createKPrime()

Specified by:

createKPrime in interface BioPAXFactory

createModel

public Model createModel()

Specified by:

createModel in interface BioPAXFactory

createModulation

public modulation createModulation()

Specified by:

createModulation in interface BioPAXFactory

createOpenControlledVocabulary

public openControlledVocabulary createOpenControlledVocabulary()

Specified by:

createOpenControlledVocabulary in interface BioPAXFactory

createPathway

public pathway createPathway()

Specified by:

createPathway in interface BioPAXFactory

createPathwayStep

public pathwayStep createPathwayStep()

Specified by:

createPathwayStep in interface BioPAXFactory

createPhysicalEntity

public physicalEntity createPhysicalEntity()

Specified by:

createPhysicalEntity in interface BioPAXFactory

createPhysicalEntityParticipant

public physicalEntityParticipant createPhysicalEntityParticipant()

Specified by:

createPhysicalEntityParticipant in interface BioPAXFactory

createProtein

public protein createProtein()

Specified by:

createProtein in interface BioPAXFactory

createPublicationXref

public publicationXref createPublicationXref()

Specified by:

createPublicationXref in interface BioPAXFactory

createRelationshipXref

public relationshipXref createRelationshipXref()

Specified by:

createRelationshipXref in interface BioPAXFactory

createRna

public rna createRna()

Specified by:

createRna in interface BioPAXFactory

createSequenceFeature

public sequenceFeature createSequenceFeature()

Specified by:

createSequenceFeature in interface BioPAXFactory

createSequenceParticipant

public sequenceParticipant createSequenceParticipant()

Specified by:

createSequenceParticipant in interface BioPAXFactory

createSequenceSite

public sequenceSite createSequenceSite()

Specified by:

createSequenceSite in interface BioPAXFactory

createSequenceInterval

public sequenceInterval createSequenceInterval()

Specified by:

createSequenceInterval in interface BioPAXFactory

createSmallMolecule

public smallMolecule createSmallMolecule()

Specified by:

createSmallMolecule in interface BioPAXFactory

createTransport

public transport createTransport()

Specified by:

createTransport in interface BioPAXFactory

createTransportWithBiochemicalReaction

public transportWithBiochemicalReaction createTransportWithBiochemicalReaction()

Specified by:

createTransportWithBiochemicalReaction in interface BioPAXFactory

createUnificationXref

public unificationXref createUnificationXref()

Specified by:

createUnificationXref in interface BioPAXFactory