January 23, 2007
System maintenance Feb 3 9:00 am to 5 9:00 am
INOH will be down from Feb 3 to Feb 5.
Our host server at the Human Genome Center (HGC) will be shutdown due to scheduled system maintenance.
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NOTICE
Due to the system maintenance and the electricity supply facilities
maintenance , we will turn down all Supercomputers at HGC
Until the maintenance of Supercomputers is completed, you will be unable
to login the Supercomputers nor to use Web service during the
following period:
February 3, 2007 9:00 - February 5, 2007 9:00
The e-mail service will be stopped the following period:
February 3, 2007 12:30 - February 3, 2007 17:00
The e-mail service will be temporarily suspended for 10-15min during 5-10pm.
Sorry for any inconveniences that it may cause.
System Administrator
Super Computer System
Human Genome Center
Posted by KenFukuda : 02:56 PM | TrackBacks
January 23, 2006
Papers
- Tatsuya Kushida, Toshihisa Takagi, and Ken Ichiro Fukuda. 2006. Event Ontology: A Pathway-Centric Ontology for Biological Processes. Pacific Symposium on Biocomputing 11:152-163(2006).
- Satoko Yamamoto, Takao Asanuma, Toshihisa Takagi and Ken Ichiro Fukuda. 2004. An Ontology for Annotation of Signal Transduction Pathway Molecules in the Scientific Literature: Molecule Role Ontology. Comparative and Functional Genomics, Volume 5, Issue 6-7, Pages 528-536 (2004).
- Ken Ichiro Fukuda, Toshihisa Takagi. 2004. A Pathway Editor for Literature-based Knowledge Curation. APBC 2004, pp.339-344. (pre print version here)
- Ken Ichiro Fukuda, Yuki Yamagata, Toshihisa Takagi. 2004. Pathway Database: Higher Order Knowledge in Biology. Information Processing Society of Japan (IPSJ), Transactions on Databases, vol.45 No.SIG7(TOD 22) June 2004, pp.77-84
- Ken Ichiro Fukuda, Yuki Yamagata, Toshihisa Takagi. 2003. FREX: a query interface for biological processes with a hierarchical and recursive structures. In Silico Biol. 4, 0007 (2003).
- Ken Ichiro Fukuda, Toshihisa Takagi. 2001. Knowledge Representation of Signal Transduction Pathways. Bioinformatics 2001. Vol.17, pp.829-837
Posted by : 04:54 PM | TrackBacks
Posters and Oral presentations
- Noriko Sakai, Tatsuya Kushida, Satoko Yamamoto, Emi Hattori, Hiromi Nakamura, Yuki Yamagata, Yukiko Nakanishi, Toshihisa Takagi, Ken Ichiro Fukuda. 2005. INOH: Pathways and Ontologies. GIW 2005.
- Tatsuya Kushida, Satoko Yamamoto, Takao Asanuma, Emi Hattori, Yuki Yamagata, Toshihisa Takagi, Ken Ichiro Fukuda. 2005. Event Ontology: Biological ontology for annotating biological pathways and sub-pathways. ISMB 2005.
- Ken Ichiro Fukuda, Takao Asanuma, Satoko Yamamoto, Tatsuya Kushida, Emi Hattori, Yuki Yamagata, Toshihisa Takagi. 2005. INOH pathway database. ISMB 2005.
- Takao Asanuma, Tatsuya Kushida, Satoko Yamamoto, Yuki Yamagata, Azumi Sekiguchi, Toshihisa Takagi, Ken Ichiro Fukuda. 2004. INOH: A Pathway Database of Biological Events. GIW 2004.
- Ken Ichiro Fukuda, Naotaka Ono, Satoko Yamamoto, Tatsuya Kushida, Yuki Yamagata, Toshihisa Takagi. 2004. INOH: A pathway database of biological events. ISMB/ECCB 2004.
- Satoko Yamamoto, Toshihisa Takagi, Ken Ichiro Fukuda. 2004. Classifying Molecules by their Roles. The Seventh Annual Bio-ontologies Meeting 2004.(presentation slides)
- Satoko Yamamoto, Tatsuya Kushida, Naotaka Ono, Yuki Yamagata, Toshihisa Takagi, Ken Ichiro Fukuda. 2003. INOH: a textual knowledge based pathway databases. GIW 2003.
- Ken Ichiro Fukuda. 2003. Signal Transduction Pathway Database: Bio-processes, Sub-processes, and their mechanisms. BMES 2003 Annual Fall Meeting.
- Ken Ichiro Fukuda. 2003. A recursively decomposable pathway DB: Annotating processes and sub-processes. The 5th BioPathways meeting 2003.
- Ken Ichiro Fukuda, Yuki Yamagata, Toshihisa Takagi. 2003. A Pathway DB: Annotating Signal Transduction Pathways with bio-processes using hierarchical multi-layered structures. ISMB 2003.
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