http://www.inoh.org/inohblog/main/ Integrating Network Objects with Hierarchies en Copyright 2011 Tue, 29 Mar 2011 14:39:55 +0900 http://www.sixapart.com/movabletype/?v=3.2-ja-2 http://blogs.law.harvard.edu/tech/rss Signal Transduction Pathway Data and Metabolic Pathway Data. Moreover, all INOH pathway diagram files are now available in BioPAX Level2 and Level3 formats. Visit Download page and get each file separately or as a single archive. ====================== newly curated pathways ====================== BMP signaling in Drosophila PDGF signaling pathway (Mammal) ================= updated pathways ================= TGF-beta_BMP Diagram(MolecularVariation) Drosophila Toll-like receptor signaling EGF signaling pathway Diagram (D. melanogaster, C. elegans) FGF signaling pathway IFN gamma signaling(JAK1 JAK2 STAT1) IL-2 signaling(JAK1 JAK3 STAT5) IL-4 signaling(JAK1 JAK3 STAT6) IL-7 signaling(JAK1 JAK3 STAT5) JAK STAT MolecularVariation 1 JAK-STAT pathway and regulation pathway Diagram (Canonical, D. melanogaster) NGF signaling pathway TGF-beta_super_family_signaling_pathway(canonical) C. elegans endoderm induction Wnt signaling pathway Diagram Canonical Wnt signaling pathway Diagram Drosophila Wingless/Wnt signaling pathway Diagram Mammalian Wnt signaling pathway Diagram Xenopus axis formation Wnt signaling pathway Diagram IL-1 signaling pathway (through JNK cascade) IL-1 signaling pathway (through NF-kappaB) IL-1 signaling pathway (through p38 cascade) Toll-like receptor signaling pathway (through JNK cascade) Toll-like receptor signaling pathway (trough NF-kappaB) Toll-like receptor signaling pathway (p38 cascade) CD4 T cell receptor signaling (ERK cascade) CD4 T cell receptor signaling (JNK cascade) CD4 T cell receptor signaling (NF-kB cascade) CD4 T cell receptor signaling GPCR signaling (G alpha s, PKA and ERK) Notch signaling pathway Diagram (Canonical, Mammal, D. melanogaster, C. elegans) JAK STAT MolecularVariation 2 Fas signaling pathway GPCR Adenosine A2A receptor signaling pathway TNFR1 signaling pathway Alanine,Aspartic acid and Asparagine metabolism Aminosugars metabolism Arginine and Proline metabolism Butanoate metabolism Citrate cycle FGF8 signaling (Mouse) FGF8 signaling (Xenopus) FGF signaling pathway (C. elegans) FGF signaling pathway (D. melanogaster) Folate metabolism Fructose and Mannose metabolism Galactose metabolism Glutamic acid and Glutamine metabolism Glycine and Serine metabolism Glycolysis and Gluconeogenesis Hedgehog signaling pathway (Canonical, Mammal, D. melanogaster) Histidine degradation IFN alpha signaling(JAK1 TYK2 STAT1 STAT2 STAT3) IL-23 signaling(JAK2 TYK2 STAT3 STAT4) Inositol phosphate metabolism Lysine degradation Methionine and Cysteine metabolism Nicotinate and Nicotinamide metabolism Pentose phosphate cycle Phenylalanine degradation Porphyrin metabolism Propanoate metabolism Prostaglandin and Leukotriene metabolism Purine nucleotides and Nucleosides metabolism Pyrimidine Nucleotides and Nucleosides metabolism Pyruvate metabolism Steroids metabolism Tryptophan degradation Tyrosine metabolism Valine,Leucine and Isoleucine degradation Insulin receptor signaling Insulin receptor signaling (C. elegans) Insulin receptor signaling (D. melanogaster) Insulin receptor signaling (Mammal)]]> http://www.inoh.org/inohblog/main/2011/03/inoh_release_40_has_been_relea.html http://www.inoh.org/inohblog/main/2011/03/inoh_release_40_has_been_relea.html PathwayData Tue, 29 Mar 2011 14:39:55 +0900 INOH Ontology Viewer and download it from the OBO site and from our download page. Statistics ========== All entries 9217 Chemicals 593 Proteins 8591 Obsoletes 32 UniProt ACs 5868 GO IDs 346 InterPro ACs 32 KEGG COMPOUND IDs 588 PubMed IDs 172]]> http://www.inoh.org/inohblog/main/2011/03/moleculerole_ontology_ver224_6.html http://www.inoh.org/inohblog/main/2011/03/moleculerole_ontology_ver224_6.html OntologyData Tue, 29 Mar 2011 12:13:37 +0900 INOH Ontology Viewer and download it from our download page. Statistics ========== all entries 52 obsolete 2 definition 44 GO IDs 49]]> http://www.inoh.org/inohblog/main/2011/03/location_ontology_ver102.html http://www.inoh.org/inohblog/main/2011/03/location_ontology_ver102.html OntologyData Wed, 23 Mar 2011 16:03:46 +0900 INOH Ontology Viewer and download it from the OBO site and from our download page. Statistics ========== All entries 3828 Obsoletes 149 definition 681 IMR IDs 5765 GO IDs 539 KEGG Reaction IDs 618 KEGG map IDs 1192 Reactome IDs 136 PSI-MI IDs 71]]> http://www.inoh.org/inohblog/main/2011/03/event_ontology_ver172.html http://www.inoh.org/inohblog/main/2011/03/event_ontology_ver172.html OntologyData Wed, 23 Mar 2011 15:45:07 +0900 here. The version number is updated from 3.4.0 to 3.5.3.]]> http://www.inoh.org/inohblog/main/2011/03/inoh_client_application_new_ve_4.html http://www.inoh.org/inohblog/main/2011/03/inoh_client_application_new_ve_4.html Software Thu, 10 Mar 2011 18:04:42 +0900 the INOH client tool and the INOH pathway dataset from this site.]]> http://www.inoh.org/inohblog/main/2011/01/similarity_search_service_of_i.html http://www.inoh.org/inohblog/main/2011/01/similarity_search_service_of_i.html Software Thu, 06 Jan 2011 18:46:12 +0900 here. The version number is updated from 3.1.9 to 3.4.0. ]]> http://www.inoh.org/inohblog/main/2011/01/inoh_client_application_new_ve_3.html http://www.inoh.org/inohblog/main/2011/01/inoh_client_application_new_ve_3.html Software Thu, 06 Jan 2011 18:37:51 +0900 INOH Ontology Viewer and download it from the OBO site and from our download page. Statistics ========== All entries 3775 Obsoletes 149 definition 652 GO IDs 516 KEGG Reaction IDs 596 KEGG map IDs 1179 Reactome IDs 110 PSI-MI IDs 70]]> http://www.inoh.org/inohblog/main/2010/06/event_ontology_ver171_1.html http://www.inoh.org/inohblog/main/2010/06/event_ontology_ver171_1.html OntologyData Mon, 14 Jun 2010 16:15:37 +0900 Signal Transduction Pathway Data and Metabolic Pathway Data. ====================== newly curated pathways ====================== Hedgehog signaling pathway Mammal D.melanogaster Canonical Insulin signaling pathway Mammal D.melanogaster C.elegans Canonical Jak-STAT signaling pathway D.melanogaster EGF signaling pathway D.melanogaster C.elegans FGF signaling pathway Mouse Xenopus D.melanogaster C.elegans IGF signaling pathway Canonical IL-5 signaling(JAK1 JAK2 STAT1 STAT5) Canonical IL-13 signaling(JAK1 TYK2 STAT6) Canonical IL-23 signaling(JAK2 TYK2 STAT3 STAT4) Canonical ====================== Metabolic pathways ====================== Alanine_Aspartate_Asparagine_metabolism Aminosugars_metabolism Arginine_Proline_metabolism Butanoate_metabolism Citrate_cycle Folate_metabolism Fructose_Mannose_metabolism Galactose_metabolism Glutamate_Glutamine_metabolism Glycine_Serine_metabolism Glycolysis_Gluconeogenesis Histidine_degradation Inositol_phosphate_metabolism Lysine_degradation Methionine_Cysteine_metabolism Nicotinate_Nicotinamide_metabolism Pentose_phosphate_cycle Phenylalanine_degradation Porphyrin_metabolism Propanoate_metabolism Prostaglandin_Leukotriene_metabolism Purine_nucleotides_nucleosides_metabolism Pyrimidine_nucleotides_nucleosides_metabolism Pyruvate_metabolism Steroids_metabolism Tryptophan_degradation Tyrosine_metabolism Valine_Leucine_Isoleucine_degradation Vitamin_B6_metabolism ================= updated pathways ================= B cell receptor signaling BMP2 signaling(TGF-beta_signaling MolecularVariation) BMP2 signaling(through TAK1) CD4 T cell receptor signaling (JNK cascade) CD4 T cell receptor signaling (NF-kB cascade) CD4 T cell receptor signaling (ERK cascade) CD4 T cell receptor signaling Drosophila IMD pathway Drosophila Toll-like receptor signaling EGF signaling pathway EPO signaling pathway(JAK2 STAT1 STAT3 STAT5) Fas signaling pathway FGF signaling pathway GPCR Adenosine A2A receptor signaling GPCR Dopamine D1like receptor GPCR GroupI metabotropic glutamate receptor GPCR signaling (G alpha i) GPCR signaling (G alpha q) GPCR signaling (G alpha s, Epac and ERK) GPCR signaling (G alpha s, PKA and ERK) GPCR signaling (cholera toxin) GPCR signaling (pertussis toxin) Growth hormone signaling(JAK2 STAT5) HGF signaling pathway IFN alpha signaling IFN gamma signaling(JAK1 JAK2 STAT1) IL-10 signaling(JAK1 TYK2 STAT3) IL-12 signaling(JAK2 TYK2 STAT4) IL-1 signaling pathway (through JNK cascade) IL-1 signaling pathway (through NF-kappaB) IL-1 signaling pathway (through p38 cascade) IL-2 signaling(JAK1 JAK3 STAT5) IL-3 signaling(JAK1 JAK2 STAT5) IL-4 signaling(JAK1 JAK3 STAT6) IL-6 signaling(JAK1 JAK2 STAT3) IL-7 signaling(JAK1 JAK3 STAT5) Integrin signaling pathway JAK STAT MolecularVariation 1 JAK STAT MolecularVariation 2 JAK-STAT pathway and regulation pathway LIF signaling(JAK1 JAK2 STAT3) NGF signaling pathway Notch signaling pathway Diagram PDGF signaling pathway TGF-beta signaling(through TAK1) TGF-beta_super_family_signaling_pathway(canonical) Toll-like receptor signaling pathway (through ECSIT, MEKK1, MKKs, JNK cascade) Toll-like receptor signaling pathway (through ECSIT, MEKK1, MKKs, p38 cascade) Toll-like receptor signaling pathway (through JNK cascade) Toll-like receptor signaling pathway (p38 cascade) Toll-like receptor signaling pathway (trough NF-kappaB) TNFR1 signaling pathway TPO signaling (JAK2 STAT3) VEGF signaling pathway C. elegans endoderm induction Wnt signaling pathway Diagram Canonical Wnt signaling pathway Diagram Drosophila Wingless/Wnt signaling pathway Diagram Mammalian Wnt signaling pathway Diagram Xenopus axis formation Wnt signaling pathway Diagram ]]> http://www.inoh.org/inohblog/main/2010/06/inoh_release_30_has_been_relea_1.html http://www.inoh.org/inohblog/main/2010/06/inoh_release_30_has_been_relea_1.html PathwayData Thu, 03 Jun 2010 15:50:46 +0900 INOH Ontology Viewer and download it from the OBO site and from our download page. Statistics ========== All entries 9132 Chemicals 593 Proteins 8538 Definition 250 UniProt ACs 5823 GO IDs 347 InterPro ACs 32 KEGG COMPOUND IDs 588 PubMed IDs 160]]> http://www.inoh.org/inohblog/main/2010/06/moleculerole_ontology_ver223.html http://www.inoh.org/inohblog/main/2010/06/moleculerole_ontology_ver223.html OntologyData Tue, 01 Jun 2010 15:23:16 +0900 INOH Ontology Viewer and download it from the OBO site and from our download page. Statistics ========== All entries 3756 Obsoletes 149 definition 653 GO IDs 516 KEGG IDs 825 Reactome IDs 110 PSI-MI IDs 70]]> http://www.inoh.org/inohblog/main/2010/06/event_ontology_ver170_1.html http://www.inoh.org/inohblog/main/2010/06/event_ontology_ver170_1.html OntologyData Tue, 01 Jun 2010 15:22:17 +0900 INOH Ontology Viewer and download it from our download page. Statistics ========== all entries 52 obsolete 2 definition 44 GO IDs 49]]> http://www.inoh.org/inohblog/main/2010/06/location_ontology_ver101.html http://www.inoh.org/inohblog/main/2010/06/location_ontology_ver101.html OntologyData Tue, 01 Jun 2010 15:20:51 +0900 here. The version number is updated from 2.2.2 to 3.1.9.]]> http://www.inoh.org/inohblog/main/2010/04/inoh_client_application_new_ve_2.html http://www.inoh.org/inohblog/main/2010/04/inoh_client_application_new_ve_2.html Software Wed, 28 Apr 2010 15:07:03 +0900 site. As soon as we release INOH pathway data 3.0.]]> http://www.inoh.org/inohblog/main/2010/04/inoh_release_25_has_been_relea.html http://www.inoh.org/inohblog/main/2010/04/inoh_release_25_has_been_relea.html PathwayData Fri, 09 Apr 2010 12:25:58 +0900 here. The version number is updated from 2.0.2 to 2.2.2.]]> http://www.inoh.org/inohblog/main/2009/05/inoh_client_application_new_ve_1.html http://www.inoh.org/inohblog/main/2009/05/inoh_client_application_new_ve_1.html Software Thu, 14 May 2009 16:39:47 +0900