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October 25, 2007
Paxtools Level2 persistency layer available!
Paxtools persistency layer for BioPAX Level 2 specification is available from the BioPAX sourceforge CVS.
Paxtools is a Domain Object Model(DOM) for BioPAX, providing software tools such as editors, exporters, importers, visualization tools and analysis algorithms with an API for manipulating BioPAX models. The Paxtools core model is developed at CBIO, MSKCC and the persistency layer is developed by INOH database.
#NOTE: Currently we only have a "dev" version in the CVS.
[documents]
Find out here how to set up your Paxtools with a backbone DBMS.
The javadoc for the Paxtools Level2 persistency layer API is available here.
You can also get the pdf file of the paxtools poster abstract at ISMB 2007 here.
Paxtools provides a complete domain object model (DOM) in Java that enables users manipulating and evaluating BioPAX. It also provides state-of-the-art persistence services based on Java Persistence API. Finally Paxtools implement a fail-fast validation framework, mitigating the cost of potential pitfalls for the developers. Paxtools was designed to be modular, lightweight and platform independent to be easily embedded into applications.[quoted from the ISMB2007 poster abstract]
Posted by KenFukuda : October 25, 2007 10:47 AM
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