January 25, 2006
INOH Client tool
INOH Client Tool is a Java Application to edit and search our pathway data.
NOTE: Search INOH pathways Online
INOH client use WebService to search pathways.
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INOH OntologyViewer
OntologyViewer is a web-based tool to view and search our ontologies.
Jump to the site
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January 23, 2006
Papers
- Tatsuya Kushida, Toshihisa Takagi, and Ken Ichiro Fukuda. 2006. Event Ontology: A Pathway-Centric Ontology for Biological Processes. Pacific Symposium on Biocomputing 11:152-163(2006).
- Satoko Yamamoto, Takao Asanuma, Toshihisa Takagi and Ken Ichiro Fukuda. 2004. An Ontology for Annotation of Signal Transduction Pathway Molecules in the Scientific Literature: Molecule Role Ontology. Comparative and Functional Genomics, Volume 5, Issue 6-7, Pages 528-536 (2004).
- Ken Ichiro Fukuda, Toshihisa Takagi. 2004. A Pathway Editor for Literature-based Knowledge Curation. APBC 2004, pp.339-344. (pre print version here)
- Ken Ichiro Fukuda, Yuki Yamagata, Toshihisa Takagi. 2004. Pathway Database: Higher Order Knowledge in Biology. Information Processing Society of Japan (IPSJ), Transactions on Databases, vol.45 No.SIG7(TOD 22) June 2004, pp.77-84
- Ken Ichiro Fukuda, Yuki Yamagata, Toshihisa Takagi. 2003. FREX: a query interface for biological processes with a hierarchical and recursive structures. In Silico Biol. 4, 0007 (2003).
- Ken Ichiro Fukuda, Toshihisa Takagi. 2001. Knowledge Representation of Signal Transduction Pathways. Bioinformatics 2001. Vol.17, pp.829-837
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Posters and Oral presentations
- Noriko Sakai, Tatsuya Kushida, Satoko Yamamoto, Emi Hattori, Hiromi Nakamura, Yuki Yamagata, Yukiko Nakanishi, Toshihisa Takagi, Ken Ichiro Fukuda. 2005. INOH: Pathways and Ontologies. GIW 2005.
- Tatsuya Kushida, Satoko Yamamoto, Takao Asanuma, Emi Hattori, Yuki Yamagata, Toshihisa Takagi, Ken Ichiro Fukuda. 2005. Event Ontology: Biological ontology for annotating biological pathways and sub-pathways. ISMB 2005.
- Ken Ichiro Fukuda, Takao Asanuma, Satoko Yamamoto, Tatsuya Kushida, Emi Hattori, Yuki Yamagata, Toshihisa Takagi. 2005. INOH pathway database. ISMB 2005.
- Takao Asanuma, Tatsuya Kushida, Satoko Yamamoto, Yuki Yamagata, Azumi Sekiguchi, Toshihisa Takagi, Ken Ichiro Fukuda. 2004. INOH: A Pathway Database of Biological Events. GIW 2004.
- Ken Ichiro Fukuda, Naotaka Ono, Satoko Yamamoto, Tatsuya Kushida, Yuki Yamagata, Toshihisa Takagi. 2004. INOH: A pathway database of biological events. ISMB/ECCB 2004.
- Satoko Yamamoto, Toshihisa Takagi, Ken Ichiro Fukuda. 2004. Classifying Molecules by their Roles. The Seventh Annual Bio-ontologies Meeting 2004.(presentation slides)
- Satoko Yamamoto, Tatsuya Kushida, Naotaka Ono, Yuki Yamagata, Toshihisa Takagi, Ken Ichiro Fukuda. 2003. INOH: a textual knowledge based pathway databases. GIW 2003.
- Ken Ichiro Fukuda. 2003. Signal Transduction Pathway Database: Bio-processes, Sub-processes, and their mechanisms. BMES 2003 Annual Fall Meeting.
- Ken Ichiro Fukuda. 2003. A recursively decomposable pathway DB: Annotating processes and sub-processes. The 5th BioPathways meeting 2003.
- Ken Ichiro Fukuda, Yuki Yamagata, Toshihisa Takagi. 2003. A Pathway DB: Annotating Signal Transduction Pathways with bio-processes using hierarchical multi-layered structures. ISMB 2003.
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