May 08, 2006
INOH Ontology Viewer Update (ver. 1.2.0)
INOH Ontology Viewer is an ontology browser for the INOH annotation ontologies.
ver. 1.2.0 allows XREF search by entering UniProt, KEGG, GO, SO IDs to see where your favorite term is located in out ontologies.
Continue reading"INOH Ontology Viewer Update (ver. 1.2.0)"
Posted by KenFukuda : 12:17 PM | TrackBacks (0)
April 04, 2006
INOH Client ver.1.0.4 released!!!
The latest INOH Client is Ver1.0.4
INOH Client Tool is a Java Application to edit and search our pathway data.
Release Notes
======================
Version 1.0.4
Do not list duplicated results in "Participant match" for the category "Hit Diagrams" and "Hit Events"
Version 1.0.3
New category "Hit Diagrams" in the "Search result summary" of "Keyword search".
User manual included in Help menu.
Tool chips display Source/Target IDs of edges.
object-def.xml update
1.The default value of "Organism" attribute of "ChemicalSubstance" node is "".
Version 1.0.2
object-def.xml update
1.changed "DNACompound" node's attribute name "DNAOntology" to "GenomeSequenceOntology".
2.deleted "EventRelation" node "Organism" attribute
Version 1.0.1
port 8083 not required anymore, normal 80 port is OK.
for Mac OS X users: INOH client now supports Command + Q.
bug fix in "Detail information dialog"
Version 1.0.0
open to the public
Posted by HiromiNakamura : 01:34 PM | TrackBacks (0)
March 17, 2006
MoleculeRole Ontology Ver.2.11
The latest MoleculeRole Ontology is Ver2.11
MoleculeRole Ontology is an ontology for proteins.
You can download it from the OBO site and from our download page.
Statistics
==========
All entries 7236
Chemicals 86
Proteins 7149
Obsoletes 19
UniProt ACs 4619
GO IDs 315
InterPro ACs 31
KEGG COMPOUND IDs 85
PubMed IDs 66
Continue reading"MoleculeRole Ontology Ver.2.11"
Posted by SatokoYamamoto : 07:23 PM | TrackBacks (0)
February 17, 2006
INOH pathway data release 1.0 is now available.
With additional 22 pathway files to the original release of February 1st, now INOH pathway data release 1.0 is available from our download site.
You can also view, edit and search the pathways with our pathway editor INOH client.
The data are in .inoh XML format. Please see the format specification for technical details.
We are currently working on BioPAX versions of our pathway data.
The BioPAX level will be BioPAX level3 or higher.
Continue reading"INOH pathway data release 1.0 is now available."
Posted by SatokoYamamoto : 09:10 PM | TrackBacks (0)
February 08, 2006
Event Ontology Ver.1.59
The latest Event Ontology is Ver.1.59
Event Ontology is an ontology of pathways.
It classifies pathways, sub-pathways and other biological phenomena to form a DAG structure.
You can download it from the OBO site and from our download page.
Statistics
==========
All entries 2665
Obsoletes 22
definition 291
GO IDs 253
KEGG PATHWAY IDs 173
Reactome IDs 110
PSI-MI IDs 51
Continue reading"Event Ontology Ver.1.59"
Posted by NorikoSakai : 04:05 PM | TrackBacks (0)
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