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Ontology Data Download

The INOH Ontologies are freely available to the public. The INOH project team gives permission for INOH ontologies to be used without license for any purpose under three conditions:

  1. That the INOH project is clearly acknowledged as the source of the product;
  2. That any INOH Ontology file(s) displayed publically include the version number(s) and/or date(s) of it;
  3. That neither the content of a INOH file(s) nor the logical relationships embedded within the INOH file(s) be altered in any way.

Please address any questions about this policy to

EmailAddress

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Use OBO-Edit ( by GeneOntology ) to open these files.

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MoleculeRole Ontology
The URL of the latest version is this.
Below is the archive of ziped ontology file.
VersionFileSizeDate
new! 2.24646 KB11/03/22
2.23632 KB10/04/28
2.22595 KB07/10/03
2.21564 KB07/03/28
2.20554 KB06/11/01
2.11469 KB06/03/17
2.10448 KB06/01/31
MoleculeRole Ontology is a hierarchical ontology which contains the molecular functional group names, the abstract molecule names and the concrete molecule names collected from literature manually. This classification is based on a conceptual classification of molecular roles in protein interaction and signal transduction.

Event Ontology
The URL of the latest version is this.
Below is the archive of ziped ontology file.
VersionFileSizeDate
new! 1.72172 KB11/03/22
1.71145 KB10/06/14
1.70137 KB10/04/28
1.6299 KB07/10/03
1.6195 KB07/03/28
1.6081 KB06/08/23
1.5978 KB06/02/08
1.5875 KB06/01/31
Event Ontology is an ontology that organizes the concepts and terms of pathway objects such as sub-pathways, biological processes and experimental environments appearing in the cellular pathway (e.g. signal transductions, disease pathways, metabolic pathways, etc.) The concepts in the Event Ontology were manually extracted from scientific articles and text books. Each concept has a link to Gene Ontology if possible.

Location Ontology
The URL of the latest version is this.
Below is the archive of ziped ontology file.
VersionFileSizeDate
new! 1.026 KB11/03/22
1.016 KB10/04/28
1.006 KB06/01/31
Location ontology is composed of the term that shows the localization of the molecule related to the process in the cell, and the term that composes is used for annotations of a protein and a molecular complex, etc. with the location ontology. Each term have been linked with Gene Ontology.

Signal Transduction Pathway Data Download  (last update 2011.03.22)

There are 73 Signal Transduction Pathway Data files now.

Download All(INOH format) : zip ( 3.3 MB )  / tar.gz ( 3.3 MB )  / lzh ( 3.9 MB )
Download All(BioPAX level2 format) : zip ( 3.5 MB )  / tar.gz ( 3.5 MB )  / lzh ( 3.9 MB )
Download All(BioPAX level3 format) : zip ( 3.5 MB )  / tar.gz ( 3.5 MB )  / lzh ( 4.0 MB )

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Use INOH Client tool to open INOH format files.

FileNameINOH format(zip)BioPAX level2 format(zip)BioPAX level3 format(zip)
PubMed
BMP2 signaling(through TAK1) 18KB 20KB 21KB
10748100, 11784015, 12700180, 14687659, 16644098, 16854512, 16949582, 8663074, 9878061
TGF-beta_BMP Diagram(MolecularVariation) 66KB 59KB 62KB
10205054, 10232991, 10775259, 10857556, 11057902, 11752591, 11752631, 11784015, 12040185, 14687659, 15705894, 15794126, 15871923, 16123801, 16172739, 16762360, 17719560, 18021936
BMP signaling in Drosophila 69KB 55KB 57KB
10232991, 10357889, 10950309, 11432817, 11752591, 14687659, 15797386, 15871923, 15916937, 16123801, 16172739, 16368928, 16762360, 17719560, 18021936, 18588885, 18706811, 19855013, 8702186, 9174659, 9335506, 9502733, 9693372, 9759503
B cell receptor signaling 39KB 51KB 52KB
11672421, 11752597, 11973130, 12461567, 14632637, 15023366, 15125833, 15219998, 15220003, 15221855, 15343367, 15541651, 16356853, 16356855, 17098202, 17468049, 7499357
CD4 T cell receptor signaling (ERK cascade) 24KB 30KB 31KB
10781399, 11672421, 11752597, 11752630, 11781344, 12040176, 12461567, 15023366, 15219998, 15220003, 15221855, 15343367, 15541651
CD4 T cell receptor signaling (JNK cascade) 30KB 37KB 38KB
10395678, 10714681, 10781399, 11094261, 11672421, 11752597, 11752630, 11781344, 12040176, 12461567, 14647476, 15023366, 15219998, 15343367, 17098202, 7546397, 8576157, 9794241
CD4 T cell receptor signaling (NF-kB cascade) 48KB 54KB 54KB
10781399, 11406365, 11672421, 11752597, 11752630, 11781344, 11973130, 12040176, 12461567, 14647476, 15023366, 15125833, 15219998, 15343367, 16356853, 16356856, 17098202, 17468049, 7568038, 8673699
CD4 T cell receptor signaling 70KB 78KB 78KB
10395678, 10714681, 10781399, 11094261, 11406365, 11672421, 11752597, 11752630, 11781344, 11973130, 12040176, 12461567, 14647476, 15023366, 15125833, 15219998, 15220003, 15221855, 15343367, 15541651, 16356853, 16356856, 17098202, 17468049, 7546397, 7568038, 8576157, 8673699, 9794241
Drosophila IMD pathway 45KB 43KB 44KB
10048301, 10409696, 10934188, 11018014, 11269501, 11402332, 11790549, 11812988, 12433364, 12464174, 12495727, 12614458, 12732719, 14519762, 14603309, 14698226, 14751763, 15037551, 15252032, 15476918, 15653304, 15708304, 15760446, 15797509, 15826489, 16497588, 16716487, 16763552, 9388784
Drosophila Toll-like receptor signaling 68KB 66KB 65KB
10409696, 11007948, 11447260, 11812988, 11934858, 12351681, 12446795, 12495727, 12614458, 12872120, 14603309, 14751763, 15476918, 15653304, 15708304, 15795223, 15797509, 15826489, 16924255
EGF signaling pathway Diagram 74KB 68KB 68KB
10728983, 11175356, 11672524, 11752629, 12648473, 12829736, 15110798, 15173823, 16123311, 16771628, 17092823, 17114579, 17466968, 17496912, 17624759, 18050474, 18088582, 9154002
EPO signaling pathway(JAK2 STAT1 STAT3 STAT5) 40KB 46KB 51KB
10379911, 10857556, 11932384, 12039028, 12040185, 14564341, 15123689, 15125881, 15561601, 15705894, 15752978, 15753310, 15996891, 16303314, 16868550, 9287210, 9794243
Fas signaling pathway 28KB 28KB 28KB
15071501, 16200196, 16406523
FGF signaling pathway Diagram 115KB 105KB 105KB
11128983, 11353842, 11399424, 11687709, 11714681, 11746231, 11752629, 11802164, 12175485, 12402043, 12835392, 14517244, 14570584, 14993266, 15075295, 15082772, 15082862, 15261649, 15282562, 15614779, 15634694, 15689573, 15704110, 15848387, 15863031, 16111545, 16216232, 16326394, 16547100, 17092823, 17384583, 17496912, 18050474, 18985724, 19158183, 19189950, 9585503, 9809073
FGF8 signaling (Mouse) 23KB 23KB 23KB
11399424, 11802164, 12402043, 15082862, 15689573, 16111545
FGF8 signaling (Xenopus) 21KB 21KB 21KB
11399424, 12402043, 15082862, 15689573, 15704110, 16111545
FGF signaling pathway (C. elegans) 15KB 15KB 15KB
11746231, 11752629, 12835392, 14517244, 15614779, 15863031, 16547100, 18050474, 18985724, 9585503
FGF signaling pathway (D. melanogaster) 35KB 32KB 32KB
11128983, 11687709, 11714681, 12175485, 14570584, 14993266, 15075295, 15082772, 15261649, 15634694, 15848387, 15863031, 16326394, 17092823, 17496912, 19158183, 19189950, 9809073
GPCR Adenosine A2A receptor signaling pathway 21KB 26KB 26KB
11752597, 11804588, 12834807, 14734786, 15023366, 15521361, 7814360, 9247123
GPCR Dopamine D1like receptor signaling pathway 21KB 25KB 25KB
10433257, 10604473, 11050161, 12834807, 14734786, 15023366, 15521361
GPCR GroupI metabotropic glutamate receptor signaling pathway 17KB 22KB 22KB
10341237, 10707049, 11672421, 11752597, 12461567, 14734786, 15023366, 15219998, 15343367, 16574233, 17376402, 7499357, 8321321
GPCR signaling (cholera toxin) 18KB 33KB 34KB
10895075, 11604548, 11752622, 12834807, 14619951, 14734786, 14762218, 15023366, 15521361, 7814360, 8834454
GPCR signaling (G alpha i) 14KB 28KB 28KB
11604548, 14734786, 14762218, 8774883
GPCR signaling (G alpha q) 20KB 36KB 37KB
10341237, 10707049, 11604548, 11672421, 11752597, 12461567, 14734786, 14762218, 15023366, 15219998, 15343367, 16574233, 17376402, 7499357, 8321321
GPCR signaling (G alpha s, Epac and ERK) 22KB 37KB 37KB
11604548, 11752597, 12834807, 14734786, 14762218, 17084085, 7814360, 9247123, 9853756
GPCR signaling (G alpha s, PKA and ERK) 24KB 41KB 41KB
11604548, 11752597, 11804588, 12834807, 14734786, 14762218, 15023366, 15521361, 7814360, 9247123
GPCR signaling (pertussis toxin) 15KB 29KB 30KB
11604548, 14734786, 14762218, 8774883, 9032437
Growth hormone signaling(JAK2 STAT5) 24KB 23KB 25KB
10379911, 11735235, 12040185, 14564341, 15125881, 15561601, 15734145, 15996891, 16112592, 16868550
Hedgehog signaling pathway 116KB 108KB 112KB
10050855, 10409506, 10500113, 10557210, 10619433, 10693759, 11257109, 11486055, 11729305, 11731473, 11912487, 11955435, 12192414, 12208857, 12372258, 12372301, 12421714, 12495844, 12586063, 1394430, 14523402, 14597665, 14614827, 14636583, 14729575, 14738752, 15189162, 15205520, 15292211, 15563523, 15616566, 15691767, 15803137, 16041759, 16326393, 16339192, 16371461, 16386907, 16516476, 16596340, 16630821, 16647304, 16678090, 16705181, 17062662, 17077139, 17102630, 17182898, 17303409, 17641202, 17881487, 17916724, 17925225, 18239057, 18355756, 18379584, 18497258, 18534984, 18583599, 18794343, 18794898, 19040769, 19081070, 19147008, 19211052, 19853559, 7885476, 7985023, 8824192, 8906787, 8906794, 9215627, 9335337, 9482888, 9593755
HGF signaling pathway 34KB 36KB 37KB
10871282, 11114738, 12791299, 14596869, 9922370
IFN alpha signaling(JAK1 TYK2 STAT1 STAT2 STAT3) 77KB 66KB 70KB
10857556, 11932384, 12039028, 12040185, 14550502, 15389589, 15541651, 15561601, 15705894, 15753310, 16681834, 9287210
IFN gamma signaling(JAK1 JAK2 STAT1) 24KB 24KB 26KB
11932384, 12039028, 12040185, 14550502, 15541651, 15561601, 15753310, 15850655, 16681834, 9287210
IGF1 signaling pathway 28KB 30KB 32KB
11406365, 11897402, 12169433, 12175651, 1383255, 15689573, 15734146, 15935690, 16621671, 16818181, 16916571, 16998536, 17020962, 17055338, 17113337, 17259557, 17598937, 17641274, 7758431
IL-10 signaling(JAK1 TYK2 STAT3) 26KB 25KB 28KB
10433356, 10851054, 10857556, 12039028, 12040185, 12626585, 15541651, 15561601, 15705894, 7543512, 9287210
IL-12 signaling(JAK2 TYK2 STAT4) 17KB 19KB 20KB
10415122, 12039028, 12040185, 12805384, 12948519, 15004198, 15541651, 15561601, 15722191, 9144409, 9287210
IL-13 signaling(JAK1 TYK2 STAT6) 24KB 21KB 22KB
10652462, 12039028, 12704343, 12791978, 15464449, 15561601, 16540365, 18502398
IL-1 signaling pathway (through JNK cascade) 47KB 49KB 49KB
10373513, 10854325, 11390361, 11460167, 12217523, 12242293, 12464174, 12620219, 12893815, 14665666, 9069263, 9261174
IL-1 signaling pathway (through NF-kappaB) 46KB 49KB 49KB
10373513, 10854325, 11460167, 12217523, 12242293, 12360211, 12464174, 12620219, 12893815, 9261174
IL-1 signaling pathway (through p38 cascade) 44KB 46KB 46KB
10373513, 10854325, 11274345, 11460167, 12217523, 12242293, 12464174, 12620219, 12893815, 14665666, 9261174
IL-23 signaling(JAK2 TYK2 STAT3 STAT4) 20KB 18KB 20KB
12525561, 12836019, 1554639, 15546391, 18238793
IL-2 signaling(JAK1 JAK3 STAT5) 19KB 20KB 21KB
10379911, 10808165, 10920190, 11750878, 12039028, 12040185, 14564341, 15125881, 15541651, 15561601, 15996891, 16750817, 16868550, 19543225, 8700888, 9287210
IL-3 signaling(JAK1 JAK2 STAT5) 17KB 19KB 20KB
10379911, 12039028, 12040185, 14564341, 15125881, 15561601, 15996891, 16767694, 16868550, 9287210, 9794243
IL-4 signaling(JAK1 JAK3 STAT6) 19KB 20KB 21KB
12039028, 12040185, 12791978, 15464449, 15541651, 15561601, 16750817, 19543225, 20335310, 9287210
IL-5 signaling(JAK1 JAK2 STAT1 STAT5) 30KB 27KB 30KB
10379911, 10881331, 11932384, 12040185, 14564341, 15125881, 15561601, 15753310, 15996891, 16868550, 17227823, 9516124, 9720754, 9794243
IL-6 signaling(JAK1 JAK2 STAT3) 20KB 22KB 23KB
10857556, 12039028, 12040185, 12773095, 15504351, 15561601, 15705894, 7772277, 9287210, 9716487
IL-7 signaling(JAK1 JAK3 STAT5) 25KB 33KB 35KB
10379911, 12039028, 12040185, 14564341, 15123689, 15125881, 15541651, 15561601, 15996891, 16303314, 16868550, 19543225, 7662955, 9287210
Insulin receptor signaling pathway 57KB 58KB 59KB
11282081, 11297505, 11377828, 11406365, 11897402, 12169433, 15005655, 15240005, 15501691, 15653324, 15689573, 15734146, 15780592, 16307172, 16458527, 16516475, 16847462, 16916571, 16998536, 16998828, 17010638, 17018022, 17041622, 17097148, 17303468, 17373657, 17374994, 17478001, 17604717, 17641274, 17646672, 17988211, 18204489, 18226095, 18306429, 18372105, 18443631, 18466115, 18560018, 18562239, 18651095, 19143635
Insulin receptor signaling (C. elegans) 80KB 76KB 79KB
11282081, 11297505, 11377828, 11406365, 11897402, 12169433, 12393910, 15005655, 15240005, 15253933, 15501691, 15653324, 15689573, 15734146, 15780592, 16307172, 16458527, 16516475, 16839734, 16847462, 16899554, 16916571, 16934425, 16998536, 16998828, 17010638, 17018022, 17041622, 17097148, 17150096, 17303468, 17364197, 17373657, 17374994, 17419990, 17478001, 17604717, 17641274, 17646672, 17988211, 18204489, 18226095, 18306429, 18372105, 18443631, 18466115, 18560018, 18562239, 18651095, 19143635, 19159343
Insulin receptor signaling (D. melanogaster) 90KB 87KB 89KB
11282081, 11297505, 11377828, 11406365, 11694634, 11897402, 12163412, 12169433, 12908874, 14645523, 15005655, 15240005, 15501691, 15653324, 15689573, 15734146, 15780592, 16054033, 16055649, 16246166, 16307172, 16458527, 16469695, 16516475, 16552183, 16847462, 16916571, 16998536, 16998828, 17010638, 17018022, 17041622, 17097148, 17139322, 17301792, 17303468, 17373657, 17374994, 17412549, 17412594, 17419990, 17478001, 17604717, 17641274, 17646672, 17908555, 17988211, 18204489, 18226095, 18291711, 18306429, 18372105, 18443631, 18466115, 18560018, 18562239, 18651095, 18682271, 19143635, 19159343, 19262129, 8628319
Insulin receptor signaling (Mammal) 123KB 113KB 116KB
11282081, 11297505, 11377828, 11406365, 11694634, 11897402, 12169433, 15005655, 15240005, 15501691, 15653324, 15689573, 15702344, 15734146, 15780592, 16226444, 16307172, 16458527, 16516475, 16684541, 16847462, 16916571, 16998356, 16998536, 16998828, 17010638, 17018022, 17041622, 17097148, 17303468, 17373657, 17374994, 17478001, 17604717, 17641274, 17646672, 17988211, 17991864, 18204489, 18226095, 18306429, 18372105, 18394876, 18443631, 18466115, 18560018, 18562239, 18635947, 18651095, 19143635, 19176517
Integrin signaling pathway 37KB 47KB 47KB
10354709, 10446041, 10809663, 12743027, 15179030, 9741627
JAK STAT MolecularVariation 1 140KB 132KB 139KB
10415122, 10433356, 10652462, 10808165, 10851054, 10857556, 10881331, 11735235, 11750878, 11750880, 12039028, 12040185, 12487370, 12626585, 12704343, 12773095, 12791978, 12805384, 12948519, 14550502, 14564341, 15125881, 15464449, 15541651, 15561601, 15722191, 15752978, 15996891, 16112592, 16303314, 16322778, 16540365, 16681834, 16750817, 16767694, 16868550, 17227823, 18502398, 8700888, 9287210, 9351438, 9516124, 9716487, 9720754, 9794243, 9974393
JAK STAT MolecularVariation 2 116KB 113KB 127KB
10379911, 10415122, 10433356, 10808165, 10851054, 10857556, 10881331, 11750880, 11932384, 12039028, 12040185, 12626585, 12704343, 12773095, 12791978, 12805384, 12948519, 14550502, 14564341, 15004198, 15125881, 15389589, 15464449, 15541651, 15561601, 15705894, 15722191, 15752978, 15753310, 15996891, 16112592, 16303314, 16322778, 16540365, 16681834, 16750817, 16767694, 16868550, 18502398, 8700888, 9144409, 9351438, 9516124, 9716487, 9794243
JAK-STAT pathway and regulation pathway Diagram 75KB 83KB 88KB
10617656, 10851058, 11504941, 11746233, 11825879, 12039028, 12194841, 12461567, 12479803, 12783781, 14607831, 15199955, 15220003, 15221855, 15225360, 15488148, 15541651, 15561601, 15686618, 15705894, 15925495, 16461274, 16750817, 16794031, 18590829, 18840523, 18848449, 9153303, 9974393
LIF signaling(JAK1 JAK2 STAT3) 25KB 26KB 28KB
10205054, 10232991, 10857556, 11752591, 12039028, 12040185, 12487370, 14687659, 15541651, 15561601, 15705894, 15794126, 16480448, 9287210, 9351438
NGF signaling pathway 20KB 24KB 24KB
10330161, 10506570, 11399424, 14641020, 15282562, 17384583
Notch signaling pathway Diagram 99KB 106KB 100KB
10221902, 10353900, 10882062, 10882063, 10940313, 11112321, 11585921, 11799064, 11818085, 12049766, 12464310, 12651094, 14670296, 14973298, 14986688, 15108805, 15288257, 15886115, 9244302, 9389650, 9653148
PDGF signaling pathway Diagram 100KB 83KB 89KB
10372961, 10461188, 10498647, 10508235, 10523848, 10579907, 11278486, 11804587, 12034353, 12952899, 14745969, 15110798, 15207812, 15207816, 15879121, 15893667, 16129686, 16516475, 16632420, 17097148, 17303404, 17496909, 17604717, 17988211, 18037132, 18466115, 18483217, 18668205, 19143635, 19465939, 19513348, 7486687, 9135144, 9253109, 9694801, 9739761
TGF-beta signaling(through TAK1) 21KB 23KB 24KB
11752591, 11994497, 12359303, 12700180, 14534577, 14687659, 15733830, 16123807, 16260493, 16644098, 16824734, 16854512, 16949582, 8663074
TGF-beta_super_family_signaling_pathway(canonical) 45KB 46KB 46KB
11057902, 11163210, 11278251, 11389444, 11752591, 11752631, 16123801, 18021936
Toll-like receptor signaling pathway (through ECSIT, MEKK1, MKKs, JNK cascade) 28KB 32KB 33KB
10465784, 10854325, 11460167, 12217523, 12242293, 12360211, 12464174, 12620219, 12893815, 14609719, 14665666, 9069263
Toll-like receptor signaling pathway (through ECSIT, MEKK1, MKKs, p38 cascade) 29KB 31KB 33KB
10465784, 10854325, 11274345, 12217523, 12242293, 12360211, 12464174, 12620219, 12893815, 14609719, 14665666
Toll-like receptor signaling pathway (through JNK cascade) 41KB 44KB 45KB
10373513, 10854325, 11460167, 12217523, 12242293, 12360211, 12464174, 12620219, 12893815, 14609719, 14665666, 9069263, 9261174
Toll-like receptor signaling pathway (trough NF-kappaB) 43KB 47KB 48KB
10373513, 10854325, 11460167, 12217523, 12242293, 12360211, 12464174, 12620219, 12893815, 14609719, 14665666, 9261174
Toll-like receptor signaling pathway (p38 cascade) 40KB 43KB 44KB
10373513, 10854325, 11274345, 11460167, 12217523, 12242293, 12360211, 12464174, 12620219, 12893815, 14609719, 14665666, 9261174
TNFR1 signaling pathway 41KB 44KB 43KB
12655295, 15653317, 16200196, 16469705, 16537970
TPO signaling(JAK2 STAT3) 18KB 18KB 19KB
10857556, 11750880, 12040185, 15561601, 15705894, 16322778
VEGF signaling pathway 24KB 35KB 34KB
10744763, 11237210, 11369257, 12843393, 13678960, 14641020, 15134532, 15282562, 17384583, 9393975, 9804796, 9922370
C. elegans endoderm induction Wnt signaling pathway Diagram 61KB 69KB 70KB
10072378, 10073940, 10097073, 10201374, 10228155, 10380924, 10391247, 10421371, 10428961, 10488343, 10517632, 10603471, 10656974, 10684251, 10688669, 10693808, 10694878, 10769018, 10775268, 10882137, 10890911, 10898789, 10978892, 11029006, 11029007, 11029008, 11336703, 11452312, 11532957, 11742996, 11955446, 11988739, 12015286, 12050670, 12205098, 12210516, 12556497, 12581524, 12581525, 12636921, 12712206, 12717451, 12900447, 14636582, 14731402, 14755243, 15066285, 15166250, 15292219, 15473860, 2158444, 8666229, 8717036, 8824257, 8985181, 9096311, 9288750, 9554852, 9556553, 9601641, 9635432, 9783586
Canonical Wnt signaling pathway Diagram 46KB 56KB 56KB
10072378, 10073940, 10097073, 10201374, 10228155, 10380924, 10391247, 10421371, 10428961, 10488343, 10517632, 10656974, 10684251, 10688669, 10693808, 10694878, 10769018, 10775268, 10882137, 10890911, 10898789, 10978892, 11029006, 11029007, 11029008, 11336703, 11452312, 11532957, 11955446, 11988739, 12015286, 12050670, 12205098, 12556497, 12581524, 12581525, 12636921, 12712206, 12717451, 12900447, 14636582, 14731402, 14755243, 15066285, 15166250, 15292219, 15473860, 2158444, 8666229, 8717036, 8824257, 8985181, 9096311, 9288750, 9554852, 9556553, 9601641, 9635432, 9783586
Drosophila Wingless/Wnt signaling pathway Diagram 72KB 78KB 79KB
10072378, 10073940, 10097073, 10201374, 10228155, 10380924, 10391247, 10421371, 10428961, 10488343, 10517632, 10656974, 10684251, 10688669, 10693808, 10694878, 10769018, 10775268, 10882137, 10890911, 10898789, 10978892, 11029006, 11029007, 11029008, 11336703, 11452312, 11532957, 11955446, 11988739, 12015286, 12050670, 12205098, 12556497, 12581524, 12581525, 12636921, 12712206, 12717451, 12850443, 12900447, 14636582, 14731402, 14755243, 15066285, 15166250, 15292219, 15473860, 2158444, 8666229, 8717036, 8824257, 8985181, 9096311, 9288750, 9554852, 9556553, 9601641, 9635432, 9783586
Mammalian Wnt signaling pathway Diagram 92KB 96KB 97KB
10072378, 10073940, 10097073, 10201374, 10228155, 10380924, 10391247, 10421371, 10428961, 10488343, 10517632, 10656974, 10684251, 10688669, 10693808, 10694878, 10769018, 10775268, 10882137, 10890911, 10898789, 10978892, 11029006, 11029007, 11029008, 11336703, 11452312, 11532957, 11955446, 11988739, 12015286, 12050670, 12205098, 12556497, 12581524, 12581525, 12636921, 12712206, 12717451, 12900447, 14636582, 14731402, 14755243, 15066285, 15166250, 15292219, 15473860, 2158444, 8666229, 8717036, 8824257, 8985181, 9096311, 9288750, 9554852, 9556553, 9601641, 9635432, 9783586
Xenopus axis formation Wnt signaling pathway Diagram 82KB 87KB 88KB
10072378, 10073940, 10097073, 10201374, 10228155, 10380924, 10391247, 10421371, 10428961, 10488343, 10517632, 10656974, 10684251, 10688669, 10693808, 10694878, 10769018, 10775268, 10882137, 10890911, 10898789, 10978892, 11029006, 11029007, 11029008, 11336703, 11452312, 11532957, 11955446, 11988739, 12015286, 12050670, 12205098, 12556497, 12581524, 12581525, 12636921, 12712206, 12717451, 12900447, 14636582, 14731402, 14755243, 15066285, 15166250, 15292219, 15473860, 2158444, 8666229, 8717036, 8756721, 8824257, 8985181, 9096311, 9288750, 9308964, 9407023, 9554852, 9556553, 9601641, 9635432, 9783586, 9783587

Metabolic Pathway Data Download  (last update 2011.03.22)

There are 29 Metabolic Pathway Data files now.

Download All(INOH format) : zip ( 869 KB )  / tar.gz ( 860 KB )  / lzh ( 927 KB )
Download All(BioPAX level2 format) : zip ( 837 KB )  / tar.gz ( 829 KB )  / lzh ( 970 KB )
Download All(BioPAX level3 format) : zip ( 795 KB )  / tar.gz ( 788 KB )  / lzh ( 900 KB )

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Use INOH Client tool to open INOH format files.

FileNameINOH format(zip)BioPAX level2 format(zip)BioPAX level3 format(zip)
Alanine,Aspartic acid and Asparagine metabolism 26KB 26KB 25KB
Aminosugars metabolism 21KB 21KB 20KB
Arginine and Proline metabolism 54KB 50KB 47KB
Butanoate metabolism 18KB 19KB 18KB
Citrate cycle 40KB 36KB 33KB
Folate metabolism 31KB 31KB 30KB
Fructose and Mannose metabolism 28KB 28KB 26KB
Galactose metabolism 12KB 12KB 12KB
Glutamic acid and Glutamine metabolism 25KB 24KB 23KB
Glycine and Serine metabolism 41KB 40KB 38KB
Glycolysis and Gluconeogenesis 35KB 33KB 31KB
Histidine degradation 13KB 16KB 15KB
Inositol phosphate metabolism 20KB 22KB 22KB
Lysine degradation 26KB 25KB 24KB
Methionine and Cysteine metabolism 25KB 25KB 24KB
Nicotinate and Nicotinamide metabolism 21KB 20KB 19KB
Pentose phosphate cycle 27KB 26KB 25KB
Phenylalanine degradation 10KB 11KB 10KB
Porphyrin metabolism 7KB 8KB 9KB
Propanoate metabolism 18KB 19KB 18KB
Prostaglandin and Leukotriene metabolism 14KB 16KB 16KB
Purine nucleotides and Nucleosides metabolism 115KB 100KB 94KB
Pyrimidine Nucleotides and Nucleosides metabolism 74KB 63KB 58KB
Pyruvate metabolism 28KB 29KB 27KB
Steroids metabolism 18KB 18KB 18KB
Tryptophan degradation 36KB 40KB 39KB
Tyrosine metabolism 38KB 35KB 33KB
Valine,Leucine and Isoleucine degradation 39KB 36KB 34KB
Vitamin B6 metabolism 8KB 8KB 8KB

Archived data

INOH format
VersionFileSizeDate
new! 4.0
Signal Transduction Pathway Data		3.3 MB11/03/22
new! 4.0
Metabolic Pathway Data		869 KB11/03/22
3.0
Signal Transduction Pathway Data		3.0 MB10/06/03
3.0
Metabolic Pathway Data		882 KB10/06/03
2.5
Signal Transduction Pathway Data		2.3 MB10/04/08
2.0
Signal Transduction Pathway Data		2.2 MB07/11/28
1.5
Signal Transduction Pathway Data		1.9 MB07/03/30
1.0
Signal Transduction Pathway Data		1.6 MB06/02/17

BioPAX format
VersionFileSizeDate
new! 4.0 (BioPAX Level3)
Signal Transduction Pathway Data		3.5 MB11/03/22
new! 4.0 (BioPAX Level3)
Metabolic Pathway Data		795 KB11/03/22
new! 4.0 (BioPAX Level2)
Signal Transduction Pathway Data		3.5 MB11/03/22
new! 4.0 (BioPAX Level2)
Metabolic Pathway Data		837 KB11/03/22
3.0 (BioPAX Level2)
Signal Transduction Pathway Data		3.0 MB10/06/03
3.0 (BioPAX Level2)
Metabolic Pathway Data		740 KB10/06/03
2.5 (BioPAX Level2)
Signal Transduction Pathway Data		2.0 MB10/04/08
2.0 (BioPAX Level2)
Signal Transduction Pathway Data		1.7 MB07/11/28
1.5 (BioPAX Level2)
Signal Transduction Pathway Data		1.2 MB07/03/30