February 04, 2008
INOH client 2.0.2 Mac OSX support
INOH client 2.0.2 does not officially support Mac OSX because some of its features require Java 6, which has not been made available from Apple yet. But if you only do browsing then you can use the linux version on your mac. See detailes in the "more" section bellow.
Continue reading"INOH client 2.0.2 Mac OSX support "
Posted by KenFukuda : 06:48 PM | TrackBacks (0)
December 03, 2007
INOH client application new version available!
Our new INOH Client is now available.
Currently only Windows and Linux are supported. Mac OSX will be supported as soon as Apple releases Java 6 for Leopard.
You can download the application from here.
This version is a major update and the version number is updated from 1.0.6 to 2.0.2.
===IMPORTANT!!!===
delete the "frame.layout" file in the .inoh directory of your home (e.g. Windows:C:\Documents and Settings\user-name,Linux:/home/user-name) before installing version 2.x.
If not, panel pane will not appear correctly in your client.
Continue reading"INOH client application new version available!"
Posted by KenFukuda : 05:22 PM | TrackBacks (0)
November 30, 2007
INOH release 2.0 has been released (BioPAX format included)
The data files are available from our download site.
======================
newly curated pathways
======================
EPO signaling pathway(JAK2 STAT1 STAT3 STAT5)
Fas signaling pathway
GPCR Adenosine A2A receptor signaling pathway
TNFR1 signaling pathway
=================
updated pathways
=================
BMP2 signaling(through TAK1)
BMP2 signaling(TGF-beta_signaling MolecularVariation)
B cell receptor signaling
CD4 T cell receptor signaling (JNK cascade)
CD4 T cell receptor signaling (NF-kB cascade)
CD4 T cell receptor signaling
Drosophila IMD pathway
Drosophila Toll-like receptor signaling
EGF signaling pathway
FGF signaling pathway
GPCR Dopamine D1like receptor signaling pathway
GPCR GroupI metabotropic glutamate receptor signaling pathway
GPCR signaling (cholera toxin)
GPCR signaling (G alpha i)
GPCR signaling (G alpha q)
GPCR signaling (G alpha s, Epac and ERK)
GPCR signaling (G alpha s, PKA and ERK)
GPCR signaling (pertussis toxin)
Growth hormone signaling(JAK2 STAT5)
HGF signaling pathway
IFN gamma signaling(JAK1 JAK2 STAT1)
IL-10 signaling(JAK1 TYK2 STAT3)
Integrin signaling pathway
JAK STAT MolecularVariation 1
JAK STAT MolecularVariation 2
JAK-STAT pathway and regulation pathway
LIF signaling(JAK1 JAK2 STAT3)
NGF signaling pathway
TGF-beta signaling(through TAK1)
TGF-beta_super_family_signaling_pathway(canonical)
Toll-like receptor signaling pathway (through ECSIT, MEKK1, MKKs, JNK cascade)
Toll-like receptor signaling pathway (through ECSIT, MEKK1, MKKs, p38 cascade)
Toll-like receptor signaling pathway (through JNK cascade)
Toll-like receptor signaling pathway (trough NF-kappaB)
Toll-like receptor signaling pathway (p38 cascade)
TPO signaling(JAK2 STAT3)
VEGF signaling pathway
C. elegans endoderm induction Wnt signaling pathway Diagram
Canonical Wnt signaling pathway Diagram
Drosophila Wingless/Wnt signaling pathway Diagram
Mammalian Wnt signaling pathway Diagram
Xenopus axis formation Wnt signaling pathway Diagram
Continue reading"INOH release 2.0 has been released (BioPAX format included)"
Posted by KenFukuda : 04:07 PM | TrackBacks (0)
October 25, 2007
Paxtools Level2 persistency layer available!
Paxtools persistency layer for BioPAX Level 2 specification is available from the BioPAX sourceforge CVS.
Paxtools is a Domain Object Model(DOM) for BioPAX, providing software tools such as editors, exporters, importers, visualization tools and analysis algorithms with an API for manipulating BioPAX models. The Paxtools core model is developed at CBIO, MSKCC and the persistency layer is developed by INOH database.
#NOTE: Currently we only have a "dev" version in the CVS.
[documents]
Find out here how to set up your Paxtools with a backbone DBMS.
The javadoc for the Paxtools Level2 persistency layer API is available here.
You can also get the pdf file of the paxtools poster abstract at ISMB 2007 here.
Continue reading"Paxtools Level2 persistency layer available!"
Posted by KenFukuda : 10:47 AM | TrackBacks (0)
October 03, 2007
MoleculeRole Ontology Ver.2.22
The latest MoleculeRole Ontology is Ver2.22
MoleculeRole Ontology is an ontology for proteins.
You can download it from the OBO site and from our download page.
Statistics
==========
All entries 8821
Chemicals 592
Proteins 8228
Obsoletes 25
UniProt ACs 5572
GO IDs 344
InterPro ACs 32
KEGG COMPOUND IDs 587
PubMed IDs 99
Continue reading"MoleculeRole Ontology Ver.2.22"
Posted by SatokoYamamoto : 05:44 PM | TrackBacks (0)
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